Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Car15g00111 | ATGGCGAATAGATGGTGGGGTGGAATTGGGAATCCTACAATGATACGGCTTGATTCTTTATCTTCCTTTGATCCTAAAAACCCAGAAGATGAAAACCAAGAAGAAGAAGAAGAAGAACAACAACAACAGCAACAACGTGATGCTAAGAATGAAGATCATCATGGAGTCAAAGCCAAGAGGCGGCCGCGAGGGCGACCACCAGGCTCAAAAAACAAGCCAAAGCCACCCATTGTCATCACCAAACACACTCCCAACGCCCTCCAAAGCCACGTCTTCGAAATCACTACTGCCACCGACATTGCCCACTCCATTTCCACCTTCGCCCACCGCCGTCACCGTGGAGTCTCCATTCTCAGCGCAACTGGTGTCGTCGCCGACGTCACTCTTCGCCAGCCCGCCGGCGTCATCACGCTCCACGAACGATTCGAGATCTTGTCTCTCTCCGGCGCTTTCCTTCCCACGCCCTCTCCCCACGGGGCTACGGGCTTGACCGTCTATCTCGCGGGCGGCCATGGCCAGGTCGTCGGTGGGCTGGTCGCCGGCCCCCTCATCGCCGCTGGTACCGTCATAGTGGTTGCAGCTTCATTTACGAACGCTATGTATGAAAGATTACCGATGGAGGATGATGATGAAGAGAATGCAAAGGAGGAGAAGCAGTCGGAAGATCATATTAATGCAAATAATTCAGGGGGAGAAGCATCATCATCAGTAGCAGCAGCAGCAGCATCAGCAGCTTCGTTGCCGGTTTATGATTTGATTCCACAAACTCAAATTTCACAAGATATGTTTTGGGCTCCTCTTCCTCCTCCTCCTCCATCTTATTAA | 825 | 51.88 | MANRWWGGIGNPTMIRLDSLSSFDPKNPEDENQEEEEEEQQQQQQRDAKNEDHHGVKAKRRPRGRPPGSKNKPKPPIVITKHTPNALQSHVFEITTATDIAHSISTFAHRRHRGVSILSATGVVADVTLRQPAGVITLHERFEILSLSGAFLPTPSPHGATGLTVYLAGGHGQVVGGLVAGPLIAAGTVIVVAASFTNAMYERLPMEDDDEENAKEEKQSEDHINANNSGGEASSSVAAAAASAASLPVYDLIPQTQISQDMFWAPLPPPPPSY | 274 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 15 | 651206 | 652030 | - | Carg02091-RA | Car15g00111 | 161948 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Car15g00111 | 274 | MobiDBLite | consensus disorder prediction | 1 | 83 | - | - | |
| Car15g00111 | 274 | MobiDBLite | consensus disorder prediction | 42 | 57 | - | - | |
| Car15g00111 | 274 | MobiDBLite | consensus disorder prediction | 205 | 237 | - | - | |
| Car15g00111 | 274 | ProSiteProfiles | PPC domain profile profile. | 84 | 220 | IPR005175 | - | |
| Car15g00111 | 274 | Coils | Coil | 31 | 52 | - | - | |
| Car15g00111 | 274 | Pfam | Plants and Prokaryotes Conserved (PCC) domain | 89 | 198 | IPR005175 | - |
Event-related genes
| Select | Gene_1 | Gene_2 | Event_name |
|---|---|---|---|
| Car04g01075 | Car15g00111 | CCT |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Car08g00972 | Car-Chr8:6470855 | Car15g00111 | Car-Chr15:651206 | 2.88E-46 | dispersed | |
| Car09g00523 | Car-Chr9:2938508 | Car15g00111 | Car-Chr15:651206 | 4.24E-44 | dispersed | |
| Car12g00177 | Car-Chr12:1096114 | Car15g00111 | Car-Chr15:651206 | 5.95E-49 | dispersed | |
| Car15g00111 | Car-Chr15:651206 | Car06g00967 | Car-Chr6:7419418 | 6.53E-60 | dispersed | |
| Car19g00198 | Car-Chr19:1863338 | Car15g00111 | Car-Chr15:651206 | 4.00E-68 | dispersed | |
| Car09g00019 | Car-Chr9:111175 | Car15g00111 | Car-Chr15:651206 | 2.84E-48 | transposed | |
| Car15g00111 | Car-Chr15:651206 | Car04g02832 | Car-Chr4:21551383 | 7.55E-89 | wgd | |
| Car15g00111 | Car-Chr15:651206 | Car04g00182 | Car-Chr4:1007855 | 4.49E-71 | wgd | |
| Car15g00111 | Car-Chr15:651206 | Car04g01075 | Car-Chr4:6193419 | 4.70E-73 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Car15g00111 | - | - | cmos:111444826 | 461.07 |