Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car15g00113 ATGGCTGAGATTTGCTTTGCTGGAGATGGCGAGCCCTCTCCCCGACCAAAATCTCGACCACGAAACTCGGCTCGCCGGACAAAGGAGTTTCTTCACCACAATGCCGCTGCCGATGAATCTGCTTCGTCGTCGTCGTCGCCGTCTACTCCGCCCTCGCACCAGGGACGGAAACGCCGCGGTGTTCATCATTCCCTCCGGCGGTGCAAAAAAGTGGATAATAATGTTGATGGTGTCGAGACGGCTAAATATGGGGTCACCTCTGTTTGCGGAAGAAGAAGAGAAATGGAGGACACGGTTTCGGTTCATCCATGCTTTGCTACTCACAGAAATCAACCCCAAATTCCCCTTCACTTTTTTGGGGTCTTCGACGGCCATGGCTGCTCTCATGTATCAGTGAGGTGCGAAAATCGAATGCATGAAATATTGAAGGAAGAGATTGAAAGCGAATTAGGAGAATCAATGGAGTGGAAGACATTGATGCAACGAAGCTTTGGGCGTATGGATGAGGAAGTCAAGGAGTACTGCCATCACGACGACGACGAGGACGACGGCGACGACGAGGACGACGAGGACGACGAGGACGACGAGGACGACGAGGACGACGACGACAAAAATAAAAATACTGTTAGTTGCAGATGCAAACTCCAGACTCCTCGCCAATACGACACCGTTGGATCAACCGCTCTGGTTGCCATCGTAACGCCCCACCAGCTCATCATCTCCAACTGCGGCGATTCCCGCGCCGTGCTTTGCCGCAAAACTAGTGTCCTCCCCCTCTCCTCCGATCATAAGCCAGATCGACCGGACGAATTGTCTCGTATAGAATCGAGAGGCGGGCGAGTGATTTACTGGGACGGGGCGAGAGTGTTGGGAGTTTTAGCGATGTCAAGAGCCATAGGAGATGGTTATCTAAAACCGTACGTGATATCGGAGCCAGAGGTGGTGGTGGTGGATCGGACCGGGGAGGATGAGTTCTTAATCTTGGCCACCGATGGCCTGTGGGACGTCGTTTCCAATGAAACAGCGTGCGACGTCGTACGAACGTGCATGCGGGCTCCGCCGGCTTCCACATCCTCGTTGAGCGGCAGTGACAAAACTTGCTCCGACGCCTCCATTGTGCTGACGAAGTTGGCCATGGCGAAGCATAGCTCAGATAACATTAGCGTAGTGGTCATAGATTTGAGAAGAGATGTCACCGAACTCTAA 1206 53.07 MAEICFAGDGEPSPRPKSRPRNSARRTKEFLHHNAAADESASSSSSPSTPPSHQGRKRRGVHHSLRRCKKVDNNVDGVETAKYGVTSVCGRRREMEDTVSVHPCFATHRNQPQIPLHFFGVFDGHGCSHVSVRCENRMHEILKEEIESELGESMEWKTLMQRSFGRMDEEVKEYCHHDDDEDDGDDEDDEDDEDDEDDEDDDDKNKNTVSCRCKLQTPRQYDTVGSTALVAIVTPHQLIISNCGDSRAVLCRKTSVLPLSSDHKPDRPDELSRIESRGGRVIYWDGARVLGVLAMSRAIGDGYLKPYVISEPEVVVVDRTGEDEFLILATDGLWDVVSNETACDVVRTCMRAPPASTSSLSGSDKTCSDASIVLTKLAMAKHSSDNISVVVIDLRRDVTEL 401
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 657134 658567 + Carg02093-RA Car15g00113 161950
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car15g00113 401 MobiDBLite consensus disorder prediction 14 35 - -
Car15g00113 401 Pfam Protein phosphatase 2C 82 176 IPR001932 -
Car15g00113 401 Pfam Protein phosphatase 2C 190 387 IPR001932 -
Car15g00113 401 MobiDBLite consensus disorder prediction 173 208 - -
Car15g00113 401 MobiDBLite consensus disorder prediction 179 203 - -
Car15g00113 401 MobiDBLite consensus disorder prediction 1 64 - -
Car15g00113 401 MobiDBLite consensus disorder prediction 37 53 - -
Car15g00113 401 ProSiteProfiles PPM-type phosphatase domain profile. 82 394 IPR001932 -
Car15g00113 401 ProSitePatterns PPM-type phosphatase domain signature. 118 126 IPR000222 GO:0043169
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car01g00570 Car-Chr1:3354591 Car15g00113 Car-Chr15:657134 7.83E-121 dispersed
Car15g00113 Car-Chr15:657134 Car16g00056 Car-Chr16:379458 7.31E-80 dispersed
Car15g00113 Car-Chr15:657134 Car16g00143 Car-Chr16:821371 3.67E-77 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car15g00113 K14497 - csv:101220425 434.876