Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car15g00116 ATGATTCGGGTGAGGGAGTCGGGGTGCAGCGCGTACACGAGCTTTGTGAACTTGAACCCGAGTTTGGGACTGTTGCAATGGCCTGAACCCGGGTTGGAGCTGCAGTGGCTTTCGCCGATGGAGCCGGTCTGTAATACGCAGGCTGATTGTGATGGGAACGCGGCTTGTGGTGTTGACCCAAGTGGGACCGGGTTGAAACGTTGTCTCTGTAATTCAGGGTTTCAGTGGGACCCTATTGCTGGAATCTGCTCTCAAAACACGTGTCATGATCCTGACGGTTGTAAGAAGTCCCGAACTGCACTAATAGCCGGCATTGTATCCGGCGTCGGCGCGGCGGTGCTCTTGTCAATAATAGCCATGTTAGTATACAGACGACATAGAAGAGCGAAAGAAGCTCAAGATCGCTTAACAAAGGAGCGTGAAGCAATTCTGAACTCCAACGGCGGAGGCGGAAGGAACGCAAAGATCTTCTCCGGAAAAGAGATCAAGAGGGCCACCCACAATTTCTCCGCCGACCGCCTTCTGGGTGCCGGCGGCTATGGTGAGGTCTACAAAGGCATTCTTGGGGACGGTACCACTGTAGCCGTGAAGTGCGCCAAGCTCGGAAACGCAAAAGGCACCGACCAAGTCCTGAATGAGGTCCGAATCCTCTGCCAAGTTAACCACCGGAGCCTTGTGTGGCTCCTTGGGTGCTGCGTTGAATTAGAACAGCCAATTTTGGTGTACGAGTATATCCCCAACGGCACTCTTCTGGACCATTTGCAAGGTAGTAAAGAGACAAGGGCATTAACATGGGAGCAGCGGCTCCAGATCGCGCAGAGCACAGCAGAGGGACTAGCATACCTTCATTTCTCAGCCGTTCCACCAATCTACCACCGAGACGTGAAATCCAGCAACATCCTACTAGACAATAAGCTAAACTCCAAAGTTTCGGATTTCGGCCTCTCCCGATTGGCGGAAACAGATTTAAGCCATATCTCAACTTGCGCGCAGGGTACTCTGGGGTATCTGGATCCGGAATACTACCGGAACTACCAGTTGACTGACAAGAGCGACGTGTACAGTTTCGGAGTGGTTCTGCTGGAGCTGTTGACATCGCAGAAGGCCATCGATTTCAACCGGGAGCCTGACGACGTGAACTTGGCGGTATACGTGCAGCGGATGGTGGAAGAAGAGAAATTGGTGGATGTCATCGATCCGAGGCTGAAGAAGGGAGCGACGGACATGGAGGTTGACACGATGAAGGCTTTGGGGTTTCTGGCAGTGGGATGCTTGGAAGAGAGAAGGCAGAATCGGCCTTCCATGAAAGAAGTGGTGGAGGAGATTCAGTACATCATAAGCGTCGCCACTGCCAAGCCTTAA 1362 52.79 MIRVRESGCSAYTSFVNLNPSLGLLQWPEPGLELQWLSPMEPVCNTQADCDGNAACGVDPSGTGLKRCLCNSGFQWDPIAGICSQNTCHDPDGCKKSRTALIAGIVSGVGAAVLLSIIAMLVYRRHRRAKEAQDRLTKEREAILNSNGGGGRNAKIFSGKEIKRATHNFSADRLLGAGGYGEVYKGILGDGTTVAVKCAKLGNAKGTDQVLNEVRILCQVNHRSLVWLLGCCVELEQPILVYEYIPNGTLLDHLQGSKETRALTWEQRLQIAQSTAEGLAYLHFSAVPPIYHRDVKSSNILLDNKLNSKVSDFGLSRLAETDLSHISTCAQGTLGYLDPEYYRNYQLTDKSDVYSFGVVLLELLTSQKAIDFNREPDDVNLAVYVQRMVEEEKLVDVIDPRLKKGATDMEVDTMKALGFLAVGCLEERRQNRPSMKEVVEEIQYIISVATAKP 453
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 666071 668175 + Carg02096-RA Car15g00116 161953
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car15g00116 453 ProSitePatterns Serine/Threonine protein kinases active-site signature. 290 302 IPR008271 GO:0004672|GO:0006468
Car15g00116 453 ProSitePatterns Protein kinases ATP-binding region signature. 175 197 IPR017441 GO:0005524
Car15g00116 453 ProSiteProfiles Protein kinase domain profile. 169 445 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car15g00116 453 Pfam Protein tyrosine and serine/threonine kinase 172 441 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car12g00472 Car-Chr12:2964459 Car15g00116 Car-Chr15:666071 3.22E-93 dispersed
Car12g00788 Car-Chr12:7582924 Car15g00116 Car-Chr15:666071 1.67E-56 dispersed
Car15g00116 Car-Chr15:666071 Car15g00057 Car-Chr15:398012 2.96E-81 dispersed
Car19g00743 Car-Chr19:8324368 Car15g00116 Car-Chr15:666071 4.38E-07 transposed
Car15g00116 Car-Chr15:666071 Car07g00991 Car-Chr7:5647233 6.43E-177 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
89370 PF07714 PK_Tyr_Ser-Thr 4.70E-46 CL0016 Car PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car15g00116 - - csv:101220186 806.208