Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Car15g00128 | ATGACGACCACCCAAAACTCCCACGTTGTCGCAATGGAGGTAGGAGAAGTAGAACAGCCTCGCCGGACTTCAGCCGCCGGCGCTGACGCCTTACTAGCCTCCAATGATGTGCGGCAGTGCTCGGGGCAGTCGAGGGCTGAGATTGTGGGGGCGGCGGCGGAGAAAAGAAGGGAATCCTCTGTGTCGGAGTGCTCTTTAGAGATGGATCTGGAATGTGGGTTGGCTGAGATTAAGGTACATTTGACGAAAATGGAGAGGGATTGTCGGATTTGCCATCTGAGTTTGGATGCTTCTAATCAGGAATCTGGAATCCCCATTGAGTTGGGTTGTTCTTGCAAGGATGACTTGGCTGCTGCTCATAAGCACTGTGCTGAAGCTTGGTTCAAGATCAAGGGCGACATCACATGTGAGATCTGTGGATCAATTGCACACAATGTTACTGCTACTTATCAACCTGATTCGACAGAGCAACGCAACGACTCAAACGACGCAACAACAGCAACCGCAGCAGCAGCAGCAGCAGCTGTGGTAGTGCCACCACACTCTACAGAGGCTCGGAACTTCTGGCAGGGCCATAGTGAAAAGCTTCATCTATCTCTTCATTCTGCAACAGCTCGAAAGCTCGACTATATCGTGTCGTTACCAGCTCGAAAGCTCCCTGAAATGGAAGCATCTTTGATGTTCGAAAAGATGCTGGAACCACTCAGCCTAGCTGGATAA | 720 | 50.97 | MTTTQNSHVVAMEVGEVEQPRRTSAAGADALLASNDVRQCSGQSRAEIVGAAAEKRRESSVSECSLEMDLECGLAEIKVHLTKMERDCRICHLSLDASNQESGIPIELGCSCKDDLAAAHKHCAEAWFKIKGDITCEICGSIAHNVTATYQPDSTEQRNDSNDATTATAAAAAAAVVVPPHSTEARNFWQGHSEKLHLSLHSATARKLDYIVSLPARKLPEMEASLMFEKMLEPLSLAG | 239 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 15 | 717305 | 719602 | - | Carg02108-RA | Car15g00128 | 161965 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Car15g00128 | 239 | ProSiteProfiles | Zinc finger RING-CH-type profile. | 80 | 146 | IPR011016 | GO:0008270 | |
| Car15g00128 | 239 | Pfam | RING-variant domain | 88 | 139 | IPR011016 | GO:0008270 |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Car15g00128 | Car-Chr15:717305 | Car01g01140 | Car-Chr1:10547988 | 3.11E-12 | dispersed | |
| Car07g01215 | Car-Chr7:7423338 | Car15g00128 | Car-Chr15:717305 | 6.57E-09 | transposed | |
| Car14g00080 | Car-Chr14:428421 | Car15g00128 | Car-Chr15:717305 | 7.98E-51 | wgd | |
| Car15g00128 | Car-Chr15:717305 | Car06g00229 | Car-Chr6:1328421 | 9.54E-51 | wgd | |
| Car15g00128 | Car-Chr15:717305 | Car07g01016 | Car-Chr7:5858833 | 9.47E-37 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Car15g00128 | - | - | cpep:111808933 | 316.235 |