Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car15g00136 ATGGCAACGACGGAGAGCACGGTCTTGCAATTTTCACAGTCTTCTAACACGTTATCTGCGAAGGTTCACCCTCTGGTAATCTTCAACATTTGTGATTGCTATGTGAGGCGCCCTGACCAGGCCGATCGAGTAATCGGTACTCTTCTTGGCTCGGTTTTACCTGATGGAACCGTTGATATTCGCAACTCTTATGCTGTTCCTCATAACGAGTTCTCGGATCAGGTTGCGCTGGATATTGACTATCATCACAATATGTTAAGTTCCCACCAAAAAGTTAATCCAAAGGAGGTTATCGTTGGATGGTACTCTACTGGTACGGGAGTTACGGGTGGCAGTGCATTGATACACGAATTTTATTCTAGAGAAGTTGCAAACCCTATTCATCTGACCGTTGATACTGGATTTAACAATGGTGAAGGAACAATAAAAGCCTATATCTCTGTCAATTTGTCCCTCGGAGATAGACAGCTTGCTGCTCAGTTTCAAGAAATTCCTTTAGATCTTCGAATGGTCGAAGCTGAGAGACTTGGATTTGATATACTGAAGACAACTTCTGTTGATAAACTGCCAAATGATTTGGAAGGAATGGAAGCTTCAATGGAGAGATTGCTTGCCTTAATCGACGATATTTACAAATATGTTGATAACGTTGTGGAAGGGCATGTTGAGGCAGACAACACGATAGGGAGATTTCTTGCTGACACTGTAGCCTCTCTTCCAAAACTGTCGCCAGCTGCTTTCGATAAGCTGATGAATGACAACGTGCAGGACCATTTGCTGTTGCTGTATTTATCAAGTATCACCAGAACACAGCTGAGCTTGGCTGAAAAGTTGAATACGGCTGCTCAGATTCTGTAA 858 43.12 MATTESTVLQFSQSSNTLSAKVHPLVIFNICDCYVRRPDQADRVIGTLLGSVLPDGTVDIRNSYAVPHNEFSDQVALDIDYHHNMLSSHQKVNPKEVIVGWYSTGTGVTGGSALIHEFYSREVANPIHLTVDTGFNNGEGTIKAYISVNLSLGDRQLAAQFQEIPLDLRMVEAERLGFDILKTTSVDKLPNDLEGMEASMERLLALIDDIYKYVDNVVEGHVEADNTIGRFLADTVASLPKLSPAAFDKLMNDNVQDHLLLLYLSSITRTQLSLAEKLNTAAQIL 285
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 751753 755169 - Carg02116-RA Car15g00136 161973
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car15g00136 285 Gene3D Cytidine Deaminase, domain 2 7 186 - -
Car15g00136 285 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT F-RELATED 17 284 - -
Car15g00136 285 Hamap Eukaryotic translation initiation factor 3 subunit F [EIF3F]. 18 281 IPR027531 GO:0003743|GO:0005852|GO:0006413|GO:0031369
Car15g00136 285 Pfam Maintenance of mitochondrial structure and function 172 278 IPR024969 -
Car15g00136 285 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT F 17 284 IPR027531 GO:0003743|GO:0005852|GO:0006413|GO:0031369
Car15g00136 285 CDD MPN_eIF3f 21 278 IPR027531 GO:0003743|GO:0005852|GO:0006413|GO:0031369
Car15g00136 285 Coils Coil 275 285 - -
Car15g00136 285 ProSiteProfiles MPN domain profile. 20 151 IPR037518 -
Car15g00136 285 SMART pad1_6 19 150 IPR000555 GO:0005515|GO:0008233|GO:0008237
Car15g00136 285 Pfam JAB1/Mov34/MPN/PAD-1 ubiquitin protease 18 121 IPR000555 GO:0005515|GO:0008233|GO:0008237
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Car04g02801 Car15g00136 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car14g00061 Car-Chr14:352287 Car15g00136 Car-Chr15:751753 1.50E-33 wgd
Car15g00136 Car-Chr15:751753 Car04g02801 Car-Chr4:21424820 0 wgd
Car15g00136 Car-Chr15:751753 Car06g00211 Car-Chr6:1239682 1.37E-33 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car15g00136 K03249 - csv:101205957 556.599