Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Car15g00175 | ATGGCTTCCTCACCAATCTCTGCTTTTTCTGTTCTTTTCCTACTTTTTATCCCTGCAATCTCCGCCGATTACGGCGGAGTGCAGTCCGGCCACGCTACCTTCTATGGCGGTGGAGACGCTTCCGGCACAATGGGTGGGGCTTGTGGGTATGGGAATTTGTACAGTCAAGGATATGGGACGAACACGGCGGCGCTGAGTACGGCTCTGTTTAACAATGGGCTGAGCTGTGGGTCTTGCTATGAAATCACTTGTAGCAGTGATCCCAAATGGTGTCTTCCTGGAAAAATCATTGTCACTGCCACTAATTTCTGTCCCCCAAACTTGGCTCTCTCCAACAGCAATGGCGGCTGGTGTAACCCTCCTCTGCAACACTTCGACTTGGCAGAGCCTGCTTTTCTCCAAATCGCTCAGTACCATGCCGGGATTGTCCCTGTCTCCTTCCGAAGAGTAGCATGCGTGAAGAAGGGAGGGATAAGGTTGACGATAAACGGCCATTCATACTTCAACTTGGTACTGATCACCAACGTGGGCGGCGCCGGCGACGTCCACTCGGTGTCAATCAAAGGGTCCAAAACTGGATGGCAAGCCATGTCCAGAAATTGGGGACAGAACTGGCAGAGCAACAATTACTTGAACGGACAGAGTCTCTCTTTCCAAATCACCACCAGCGACGGCCGCACCGTCACCAGCTACAACGCCGTTCCGGCCAACTGGCAGTTCGGCCAGACATTCGAGGCGGGCCAGTTCTGA | 750 | 53.2 | MASSPISAFSVLFLLFIPAISADYGGVQSGHATFYGGGDASGTMGGACGYGNLYSQGYGTNTAALSTALFNNGLSCGSCYEITCSSDPKWCLPGKIIVTATNFCPPNLALSNSNGGWCNPPLQHFDLAEPAFLQIAQYHAGIVPVSFRRVACVKKGGIRLTINGHSYFNLVLITNVGGAGDVHSVSIKGSKTGWQAMSRNWGQNWQSNNYLNGQSLSFQITTSDGRTVTSYNAVPANWQFGQTFEAGQF | 249 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 15 | 932957 | 934334 | - | Carg02156-RA | Car15g00175 | 162012 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Car15g00175 | 249 | ProSiteProfiles | Expansin, family-45 endoglucanase-like domain profile. | 45 | 157 | IPR007112 | - | |
| Car15g00175 | 249 | Pfam | Lytic transglycolase | 62 | 147 | IPR009009 | - | |
| Car15g00175 | 249 | Pfam | Expansin C-terminal domain | 158 | 235 | IPR007117 | - | |
| Car15g00175 | 249 | ProSiteProfiles | Expansin, Cellulose-binding-like domain profile. | 167 | 246 | IPR007117 | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Car04g01707 | Car-Chr4:9792612 | Car15g00175 | Car-Chr15:932957 | 5.18E-141 | dispersed | |
| Car15g00175 | Car-Chr15:932957 | Car15g00262 | Car-Chr15:1437362 | 8.86E-127 | dispersed | |
| Car18g01051 | Car-Chr18:10776371 | Car15g00175 | Car-Chr15:932957 | 3.88E-123 | dispersed | |
| Car15g00175 | Car-Chr15:932957 | Car04g02757 | Car-Chr4:21230065 | 4.14E-155 | wgd | |
| Car15g00175 | Car-Chr15:932957 | Car04g00102 | Car-Chr4:560825 | 1.84E-112 | wgd | |
| Car15g00175 | Car-Chr15:932957 | Car04g00992 | Car-Chr4:5714487 | 4.96E-151 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Car15g00175 | - | K20628 | csv:101217496 | 466.848 |