Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car15g00179 ATGAGAAGGCTACTGGGGCTGTTCGTCTTGTTCGTTGTGGCTCCGGTGTGGGTGAGATCTCTGAACCCACCTCTGAACGACGACGTTTTGGGGCTGATTGTGTTCAAGGCTGACATTGAAGACCCTAAAGGGAGACTCGCGTCGTGGAATGAAGATGACGATAACCCCTGTAATTGGGTTGGTGTAAAATGCAACCCCAGATCCAATAGAGTTGTTGAGCTCGATCTTGATGGCTTCTCTCTCAATGGAAGGCTTGGCCGTGGTCTTCTTCAGCTGCAGTTTCTTCGTAAACTATCTCTTTCCAACAACAATCTTACTGGAAATTTAAGTCCCAATAATGCTCGCTTTGAAAATCTGCGAGTGGTGGATTTGAGCGGCAACAGTTTTCATGGGATGATACCGGATGATTTCTTCCGGCAATGTGGGTCGTTGAGAGTAATCTCTTTGGCTAAGAACAAACTTTCAGGGAAAATCCCCGAAAGTTTGGGCTCTTGCGTCAGTCTTGCTGCTGTTAATTTATCTTATAATCAGTTTTCTGGTTCATTACCTTCTGGGATTTGGTCTTTGACTGGGCTTCGGTCCTTGGATTTTTCTGGTAATGTTTTGGAAGGTGAAATTCCACTGGAGGTGAAGAGTATGAATAATTTGCGAGCTATTAATTTGGGGAAGAATCGGTTTTCTGGACAGATCCCAGATGGGATTGGGAGTTGTTTGCTCTTGAGGTCTGTTGATCTCAGTGAGAATTCTTTCTCCGGCGACATTCCGGCGACAATGCAGCGGCTTAGTTTATGCAGTACTCTGAATTTAAGAAGAAACCTATTTGAAGGGAAGGTTCCTGAATGGATTGGTGAAATGGAAGGCCTTGAAATCTTGGATCTTTCAGGGAATAGATTTTCTGGTCCGGTTCCAAGTTCATTCAGGAATCTTCAGAATCTGAAGGTTTTGAATCTTTCTGAAAATGGTTTAATTGGCAGCTTGGCAGGGTCCGTACTTCCTTCTCAAAACCTTTCAGCCATGGATCTCGGCCACGGCTCTCTCACCGGTGTGCTTCCGGCCTGGATTCTGAAGCTGGGTTCTCAAAATGTATTGCCTTCTGATGTCAAAAGAAGCTCTCTTTCTACACCTGTGGGAAAAGCTCTTGTGAATCTTCAAGTGTTGGATTTGTCGCACAATGCACTTTCTGGTGAAATTTCACCTGAGATTGGGATATTAAGTAACTTGCAGGTGTTGAACCTGTGTAAGAACTCATTTGTTGGGGCTATTCCAGAGAGTGTTGGAGGCATGAAGGGCCTGGTTTTTCTTGACTTGAGTGAGAACCAGCTGAATGGAAGCATTCCCGGAACGCTCGGCGGAGACGAATCGTTGAAAGAATTGAGACTGGAGAAGAACTTGCTGGAAGGTGAAGTTCCAAATTCGATTGGGAACTGTTCTTCACTTGTAACTTTGGACATGTCGGAAAACAGGTTAAGTGGCTCCATACCAGCAGCATTGTCTCTACTGACCAATCTTCAAGTTGTGGACTTATCCGCAAACAATCTCAGTGGTGGACTGCCAAAACAGTTGGCCAATCTTCCCAACCTTCTTTTATTCAACATTTCTCACAACAATCTGCAGGGAGAACTGCCGGCAGGTGGCTTTTTCAATACAATCTCCCCTTCCTCTGTGGCTGGAAATCCTTCTCTTTGTGGTTCTATTGTCAAAAAGTCTTGCCCTGGTGTCCTTCCAAAGCCTATTGTTCTAAACCCCAACTCATCTTCTGACTCTGGTTCTCCTTCATTACCTTCAACTCTTGGTCACAAAAGAATCATTCTCAGCATCTCTGCACTCATTGCCATTGGTGCAGCTGCTGTTATCCTTGTTGGTGTAGTTGCGATCACCGTCCTTAACTTCCATGTTCGGTCATCTGCAAATCGTCCTGAAGCAGCCATCACGTTTTCTGGGGGAGATGACTTCAGCAACTCCCCAACTACAGATGCCAATTCTGGCAAGCTGGTCATGTTCTCGGGAGATCCTGACTTCAGTACCGGTGCACATGCCCTCCTTAACAAGGATTGTGAGCTTGGCCGCGGAGGATTTGGAGCGGTTTACCAGACTGTTCTTCGTGATGGGCACCCGGTTGCAATAAAAAAGCTCACAGTTTCAAGTCTTGTCAAATCTCAAGAAGAGTTTGAAAGGGAGGTTAAGAAATTGGGGAAGGTTAGACACCAAAATCTTGTGGCTCTAGAAGGTTATTACTGGACTCCATCTCTGCAGCTCCTTATATATGAATTTGTTTCTGGAGGGAGTCTGTATAAACAGCTTCATGAAGGATTGGGTGGAAACATCCTTTCATGGAATGAAAGATTTAACATAATCCTCAAAACCGCGAAAAGCTTGGCTCATTTGCACCAAATGAACATCATCCACTACAATATAAAATCAAGCAATGTTCTGATTGATGGTTCAGGCGAGCCTAAAGTTGGAGATTTTGGCCTAGCAAGGTTGTTGCCAATGCTTGATCGGTACGTGTTGAGCAGTAAGATACAGAGTGCACTTGGCTATATGGCACCCGAATTTGCCTGCAAAACAGTTAAGATAACGGAGAAATGTGATGTGTATGGATTTGGAGTTCTGGTTCTTGAGGTGGTAACGGGGAAGAGACCTGTAGAGTACATGGAAGACGATGTGGTGGTACTCTGCGACATGGTTCGGCGAGCGCTGGAAGAAGGTGGGGTGGAGGAATGCATTGATGGGAGGCTCCAGAGAAATTTCCCATCTGAGGAGGCCATACCAGTAGTGAAACTAGGATTGATATGCACCTCACAGGTGCCATCAAACCGACCTGATATGACAGAGGTTGTTAATATATTAGAGCTTATCAGATGTCCATCAGAAGGCCAAGAAGAATTGGGATAA 2895 45.18 MRRLLGLFVLFVVAPVWVRSLNPPLNDDVLGLIVFKADIEDPKGRLASWNEDDDNPCNWVGVKCNPRSNRVVELDLDGFSLNGRLGRGLLQLQFLRKLSLSNNNLTGNLSPNNARFENLRVVDLSGNSFHGMIPDDFFRQCGSLRVISLAKNKLSGKIPESLGSCVSLAAVNLSYNQFSGSLPSGIWSLTGLRSLDFSGNVLEGEIPLEVKSMNNLRAINLGKNRFSGQIPDGIGSCLLLRSVDLSENSFSGDIPATMQRLSLCSTLNLRRNLFEGKVPEWIGEMEGLEILDLSGNRFSGPVPSSFRNLQNLKVLNLSENGLIGSLAGSVLPSQNLSAMDLGHGSLTGVLPAWILKLGSQNVLPSDVKRSSLSTPVGKALVNLQVLDLSHNALSGEISPEIGILSNLQVLNLCKNSFVGAIPESVGGMKGLVFLDLSENQLNGSIPGTLGGDESLKELRLEKNLLEGEVPNSIGNCSSLVTLDMSENRLSGSIPAALSLLTNLQVVDLSANNLSGGLPKQLANLPNLLLFNISHNNLQGELPAGGFFNTISPSSVAGNPSLCGSIVKKSCPGVLPKPIVLNPNSSSDSGSPSLPSTLGHKRIILSISALIAIGAAAVILVGVVAITVLNFHVRSSANRPEAAITFSGGDDFSNSPTTDANSGKLVMFSGDPDFSTGAHALLNKDCELGRGGFGAVYQTVLRDGHPVAIKKLTVSSLVKSQEEFEREVKKLGKVRHQNLVALEGYYWTPSLQLLIYEFVSGGSLYKQLHEGLGGNILSWNERFNIILKTAKSLAHLHQMNIIHYNIKSSNVLIDGSGEPKVGDFGLARLLPMLDRYVLSSKIQSALGYMAPEFACKTVKITEKCDVYGFGVLVLEVVTGKRPVEYMEDDVVVLCDMVRRALEEGGVEECIDGRLQRNFPSEEAIPVVKLGLICTSQVPSNRPDMTEVVNILELIRCPSEGQEELG 964
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 952707 956833 - Carg02160-RA Car15g00179 162016
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car15g00179 964 Pfam Leucine rich repeat N-terminal domain 26 65 IPR013210 -
Car15g00179 964 Pfam Leucine rich repeat 240 298 IPR001611 GO:0005515
Car15g00179 964 Pfam Leucine rich repeat 118 178 IPR001611 GO:0005515
Car15g00179 964 Pfam Leucine rich repeat 405 465 IPR001611 GO:0005515
Car15g00179 964 Pfam Protein kinase domain 684 947 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car15g00179 964 ProSiteProfiles Leucine-rich repeat profile. 382 404 IPR001611 GO:0005515
Car15g00179 964 ProSiteProfiles Protein kinase domain profile. 681 953 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car15g00179 964 ProSitePatterns Protein kinases ATP-binding region signature. 687 710 IPR017441 GO:0005524
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Car04g00097 Car15g00179 CCT
Car04g00097 Car15g00179 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car13g00375 Car-Chr13:6315367 Car15g00179 Car-Chr15:952707 1.46E-75 dispersed
Car15g00179 Car-Chr15:952707 Car02g01469 Car-Chr2:9585363 8.78E-133 dispersed
Car06g00657 Car-Chr6:3924543 Car15g00179 Car-Chr15:952707 2.11E-177 transposed
Car14g01318 Car-Chr14:11167356 Car15g00179 Car-Chr15:952707 0 transposed
Car14g00008 Car-Chr14:55752 Car15g00179 Car-Chr15:952707 0 wgd
Car15g00179 Car-Chr15:952707 Car04g00097 Car-Chr4:542736 0 wgd
Car15g00179 Car-Chr15:952707 Car04g00987 Car-Chr4:5691314 0 wgd
Car15g00179 Car-Chr15:952707 Car06g00162 Car-Chr6:982934 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
89372 PF00069 Pkinase 4.30E-41 CL0016 Car PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car15g00179 - - csv:101217024 1685.23