Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car15g00220 ATGTGGAAAACTATTGCCAAGCAAGCTATTTCTAAGACTCGGCAGTTTCATCTTGATTGGCATTGCCTTTCCCGCTCCCATGGCGTTATGGGTCGTCTCAATGAGTCTATAATTCGCGAGAAGTTAATATCTGGTAAATTTGTTCTTAGTTCACTTCCGAAGTTCGGGATTTCGGAACTGGGTATTGGTCGGAGTGAAGTTTTGTCCCAGGAAGATTATGGAAGCCGATTCTGTTTTGGGTCTATGGGAGTTCGTATTGGGTTAAATGGGTCGATCCCAAAAGGCTATTCTAGCGTTGCTGAGGCGGTTTCGTCAACAGATGTGGACGAAGATTCATCTATTGACGAAGAAATCGAGGAGTTATTGCAAGAGATGAGAAAAGAAGAGAAGAGGCAGGTTCAGCGTAGGAGAAGGAGGCTGAAAAGGGTGAAGGGAATGGGAGAACAGAAGTATCAAATGCTGAAGAGGCGGCAGGTGGCTATAGAGACAGAGGCTTGGAAACAGGCAGTTAAGGAGTACAAGGAGCTATTGATGGACATGTGTGAGCAGAAGCTAGCACCTAATTTGCCTTACATGAAGTCCTTGTTCCTTGGCTGGTTCGAGCCTTTGCGTGATGCTATAAGTAAAGAGCAAGAATTGATCCGCATAGGGAAGAACAGGGCTGCATATGCTCCTTATTTTGATCAACTATCTGCTGATATGATGTCGGTAGTCACGATGCATAAGTTGATAGGGCTGTTGATGATGGGACATGAGCACGGTAATGCCAGGGTTGTGCAGGCTGCTTGTGCAATTGGAGATGCTATTGAACAGGAGGTTAGAATTCACAGATTCTTGGAGAAAATGAAAAAGAAAAAGCACGACAAAGATAACGAGAACAATGACAAACCTGATTCTCAGCTGAAGGAACAAGAGTGGTTAAGGAAAAAAGTCACCAACTTGATTAAAAAGCAAAAGCTTCCGACTGTAAGACATATAGTGAAGGGAGGCGATGATTCAAAACCATGGGGCCCGGACGCCAAAGCAAAGGTTGGGAGCCGTCTTATTGAGTTGTTGACACAAACAGCGTACATACAACCTCCTGCTGATCAGTTGGCTGATGGTCCACCTGATATTCGTCCTGCATTTCGTCACTCATTTAGAATTGTGATGAAAGAAGCAAACAAAAACTCTAGCAGGAGATATGGTGTCATTGAATGTGACCCTTTAGTCGTCAAAGGCTTAGAAAGGACTGCAAGACACATGGTGATTCCCTATATGCCAATGTTGGTGCCCCCAGTCAACTGGACTGGCTATGACAAAGGAGGACACATCTTCTTACCATCGTTTATCATGCGTACTCGTGGAGCCAACCAACAACGCGAAGCTGTTAAGAGGACCCCAAAGCAACAATTAACTCCTGTTTTTGAGGCCTTAGACACTCTTGGAAATACCAAATGGAGAATAAACAAAAAGATACTCAGTATAGTGGATAGAATATGGACCAGTGGAGGGCGCCTTGCTGATCTAGTGGATCGGGATGACGTTCCATTGCCAGAAAAACCTGATTCTGAAGATGAAACGCTGCTGAGAAAGTGGAAATGGAAAGTCAAATCTGTGAAGAAAGAAAATGTGGAGAGGCATTCACAACGTTGTGACATAGAGCTTAAACTTGCTGTAGCACACAAAATGAAGGACGAGGAAGGTTTTTACTATCCACATAATTTAGACTTTCGAGGCCGTGCATATCCTATGCATCCACACTTGAATCATCTTGGTTCAGATCTTTGCCGAGGCATATTGGAGTTCGCAGAAGGTCGCCCACTCGGGAAGTCTGGCCTACGTTGGCTTAAGATTCACTTGGCAAATCTATTTGCTGGGGGTGTGGATAAATTATCTCATGATGGTCGAATAACCTTTATTGACGATCACGTAGAAGATATATTTGATTCTGCTGACAGACCACTTGAAGGAAGACGCTGGTGGCTGAATGCGGAGGATCCATTTCAGTTTTTAGCTGGATGCATGAATCTTACTGAAGCTTTGAGAAGCTCTTCTCCAGAAACAGTTATTTCACATATTCCAATACACCAGGATGGTTCTTGCAATGGGTTACAACACTACGCTGCTCTTGGACGAGACAAGTTAGGAGCAGCTGCTGTCAATCTGGCCGTGAGAGAGAAGCCTGCAGATGTGTACTCTGGAATAGCTGCTAGGGTTCTGGAAATCGTGCGAAAAGATGCACAAAGAGATCCAGAAACTTTTCCAGATGCATTGCGTGCAAAAACATTAATAGATCAGGTGGACAGAAAATTGGTGAAGCAAACAGTGATGACATCGGTTTATGGCGTCACCTATATTGGCGCTCGTGATCAGATCAAAAGGAGGCTGAAGGAGCGTGCTGCCATATCTGATGATACAGAGCTTTTTGGCTGTGCTTGCTATGCTGCCAAGACCACGTTAACGGCACTAGGGGAAATGTTCGAAGCAGCCCGTGGGATCATGAGTTGGCTAGGAGACTGTGCAAAAATCATTGCCTCTGAAAATCAACCTGTGCGATGGACTACACCTCTTGGACTACCTGTTGTGCAACCGTATCGCAAGTTGGGAAAGCATCTTGTCAAAACTTCTCTCCAAGTTTTGACACTACAACAAGAAACAGACAAGGTCTTGGTAAAGAGGCAGCGGACAGCTTTCCCACCAAATTTTGTTCACTCCCTTGATGGTTCTCATATGATGATGACTGCTGTTGCTTGCAAAAGGGCAGGTTTGAATTTTGCAGGGGTTCATGATTCGTACTGGACACACGCTTGCGACGTGGATGAAATGAACAGAATACTTAGAGAGAAGTTCGTCGAACTTTACGAGACTCCAATACTCGAAAATTTATTGGAGGGCTTTCAGCAATCTTTTCCTGCGTTGGACTTTCCTCCTCTACCCGAACGGGGAGACTGGGCATTGCCTGCACAAGTACTCCTACTGTTAGTATCAAGAGTAATGGAGGATGATGCTGAGAGTCCCTGGTGCAGACTGGCCACTATCTGCAAGAACTTCCCATCTGCTTCTGTTCATCGAAGACGATTGAAGTCGAACGGACCATATTTTCCAGAAAGGAAAGCCTGGTACGATCAAGATTGCCACAGTAACAAAGGATTGCTTGCTCTGCTACAGGCTTGCAACTGTCTCTATGGGACTTACCCCATTTCAGTCTCTGCACCTCTGGTTTACTTCTGGGGTTTTGCCTATGGTAACCGAGCGTGCTCAAGCAGCGATCTCCTTCGTGTCAGTTGTCAAGAGGGGTTTTTGCTTACAAGCTTGAGCTGTTGGAAGGAAGATCAGACTCTGCGAGTCACTGCGATTGGAGATTCATTGGAGCTTCACTAA 3363 45.17 MWKTIAKQAISKTRQFHLDWHCLSRSHGVMGRLNESIIREKLISGKFVLSSLPKFGISELGIGRSEVLSQEDYGSRFCFGSMGVRIGLNGSIPKGYSSVAEAVSSTDVDEDSSIDEEIEELLQEMRKEEKRQVQRRRRRLKRVKGMGEQKYQMLKRRQVAIETEAWKQAVKEYKELLMDMCEQKLAPNLPYMKSLFLGWFEPLRDAISKEQELIRIGKNRAAYAPYFDQLSADMMSVVTMHKLIGLLMMGHEHGNARVVQAACAIGDAIEQEVRIHRFLEKMKKKKHDKDNENNDKPDSQLKEQEWLRKKVTNLIKKQKLPTVRHIVKGGDDSKPWGPDAKAKVGSRLIELLTQTAYIQPPADQLADGPPDIRPAFRHSFRIVMKEANKNSSRRYGVIECDPLVVKGLERTARHMVIPYMPMLVPPVNWTGYDKGGHIFLPSFIMRTRGANQQREAVKRTPKQQLTPVFEALDTLGNTKWRINKKILSIVDRIWTSGGRLADLVDRDDVPLPEKPDSEDETLLRKWKWKVKSVKKENVERHSQRCDIELKLAVAHKMKDEEGFYYPHNLDFRGRAYPMHPHLNHLGSDLCRGILEFAEGRPLGKSGLRWLKIHLANLFAGGVDKLSHDGRITFIDDHVEDIFDSADRPLEGRRWWLNAEDPFQFLAGCMNLTEALRSSSPETVISHIPIHQDGSCNGLQHYAALGRDKLGAAAVNLAVREKPADVYSGIAARVLEIVRKDAQRDPETFPDALRAKTLIDQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKERAAISDDTELFGCACYAAKTTLTALGEMFEAARGIMSWLGDCAKIIASENQPVRWTTPLGLPVVQPYRKLGKHLVKTSLQVLTLQQETDKVLVKRQRTAFPPNFVHSLDGSHMMMTAVACKRAGLNFAGVHDSYWTHACDVDEMNRILREKFVELYETPILENLLEGFQQSFPALDFPPLPERGDWALPAQVLLLLVSRVMEDDAESPWCRLATICKNFPSASVHRRRLKSNGPYFPERKAWYDQDCHSNKGLLALLQACNCLYGTYPISVSAPLVYFWGFAYGNRACSSSDLLRVSCQEGFLLTSLSCWKEDQTLRVTAIGDSLELH 1120
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 1224321 1234441 - Carg02201-RA Car15g00220 162057

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car15g00220 1120 ProSitePatterns Bacteriophage-type RNA polymerase family active site signature 2. 761 775 IPR002092 GO:0003677|GO:0003899|GO:0006351
Car15g00220 1120 Coils Coil 111 138 - -
Car15g00220 1120 Pfam DNA-directed RNA polymerase N-terminal 157 477 IPR029262 -
Car15g00220 1120 ProSitePatterns Bacteriophage-type RNA polymerase family active site signature 1. 688 699 IPR002092 GO:0003677|GO:0003899|GO:0006351
Car15g00220 1120 Pfam DNA-dependent RNA polymerase 600 965 IPR002092 GO:0003677|GO:0003899|GO:0006351
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car15g00220 K10908 POLRMT, RPO41; DNA-directed RNA polymerase, mitochondrial [EC:2.7.7.6] - csv:101217508 1537.32
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car12g00756 Car-Chr12:7269624 Car15g00220 Car-Chr15:1224321 2.34E-47 dispersed
Car15g00220 Car-Chr15:1224321 Car05g00906 Car-Chr5:8806598 0 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1006 . . . . . . . . . Cmo18g01103 . Cma18g01081 . . Sed06g1812 Cpe09g00242 . Bhi07g01439 Tan04g0951 Cmetu04g2545 Lac13g0412 Hepe10g1827 . . Cla05g02372 Cam05g2540 Cec05g2571 Cco05g2609 Clacu05g2538 Cmu05g2397 Cre05g2514 . . . . Lsi04g00334 Csa05g02536 Chy10g01079 Cme10g00332 . . . . . . . . . . . . . . Car15g00220 Cpe13g00995 . . . . . . . . . . . . . . . . . Chy09g00175 .
Vvi14g971 . Blo11g00328 . . . . . . . . . . . . Sed11g2062 . Cpe13g00995 Bhi06g00325 Tan11g0405 Cmetu09g1013 . . . . Cla11g00472 Cam11g0529 Cec11g0522 Cco11g0516 Clacu11g0650 Cmu11g0510 Cre11g0990 . . Cone2ag0479 Cone16ag0527 . Csa05g03059 . . . . Bda07g01042 . . . . . . . . . . . Car15g00220 . . . . . . . . . . . . . . . . Lsi03g00194 . Chy09g00175 Cme09g00190
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000643 2 4 3 3 2 3 3 3 3 3 3 3 4 3 4 5 3 4 5 3 3 3 3 5 4 3 3 3 4 3 100
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car15g00220 Car_Chr15 FPKM 14.257778 14.440994 17.300684 13.45799 8.267353 6.384212 8.991838 12.842408 14.483296 14.801305