Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car15g00221 ATGGGGGCGGTGACATCGTCCATGGCGGCGAAGTTCGCGTTCTTTCCGCCGAATCCGCCATCGTATAAAGTGGAAGAGGTGGAGGACGGCACCGGGAAGCTGGTGATGACGGAGGTAGCGGCAAGGGGAAACTTCGACGTTTTGAAGCTTAGTACCAAGAGAGGGAACCAGGTCGTAGCCCTGTATGTAAAGAATGTATCAGCTACTTTAACGTTGCTTTATTCCCATGGAAACGCTGCGGATTTGGGGCAGATGTACGACTTATTTGTGGAGCTTAGTTCTCATCTTCGAGTCAACTTGATAGGGTACGACTATTCGGGATATGGCCAATCTACTGGAAAGCCAAGTGAGCAGAATACTTATGCAGACATTGAAGCTGTGTATAGATGCCTAGTGGAGAAATATGGGGCAAAGGAGGAAGATGTCATCTTGTATGGGCAATCAGTTGGGAGTGGACCTACATTAGATTTGGCTACTCGTTTACCTAACTTGAGGGCCATTGTTCTTCACAGTCCGATCTTGTCAGGCGTTCGAGTCATGTATCCCGTGAAGCGAACGTTCTGGTTCGACATTTATAAGAATATTGACAAAATACCATTGGTCAGTTGTCCAGTTCTTGTTATTCATGGAACTGATGACGACGTTGTCGACTGGTCCCATGGAAAGCAACTTTGGGATCTTTGTAAAGAAAAGTACGAGCCTTTATGGATTAAAGGAGGGAACCACTGTGACTTAGAGCTATACCCACAGTACATAAGACATCTCAAGAAGTTCGTGTCTGCCATCGAGAAATCACATCCTAGGAGTGCACCTGGACAAGCCACGAACCAGCTCGACGTTCCCAGAAACAGCACTGACGTTAGAGAAAAATCTAGACCCAGCACAGATCAAAGAGAGAAAACAACCATAACGAGTGCTGATCAAACAGAAAAGCCGAGGACTAGCATGGACTGTGGTAATGGAGACAGGTCTAAAAAGATGTTAGACCAGCCAGAGAAAGCGAGGAACAGTATTGACCGGTTTGGGGACATGGTGAGATCGGTTGGATTATGCAATATCGATTGTTTCAAACCTACGGCAACACATGTATAG 1092 46.43 MGAVTSSMAAKFAFFPPNPPSYKVEEVEDGTGKLVMTEVAARGNFDVLKLSTKRGNQVVALYVKNVSATLTLLYSHGNAADLGQMYDLFVELSSHLRVNLIGYDYSGYGQSTGKPSEQNTYADIEAVYRCLVEKYGAKEEDVILYGQSVGSGPTLDLATRLPNLRAIVLHSPILSGVRVMYPVKRTFWFDIYKNIDKIPLVSCPVLVIHGTDDDVVDWSHGKQLWDLCKEKYEPLWIKGGNHCDLELYPQYIRHLKKFVSAIEKSHPRSAPGQATNQLDVPRNSTDVREKSRPSTDQREKTTITSADQTEKPRTSMDCGNGDRSKKMLDQPEKARNSIDRFGDMVRSVGLCNIDCFKPTATHV 363
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 1235100 1238749 - Carg02202-RA Car15g00221 162058

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car15g00221 363 MobiDBLite consensus disorder prediction 316 335 - -
Car15g00221 363 MobiDBLite consensus disorder prediction 283 297 - -
Car15g00221 363 Pfam Serine aminopeptidase, S33 72 177 IPR022742 -
Car15g00221 363 MobiDBLite consensus disorder prediction 298 315 - -
Car15g00221 363 MobiDBLite consensus disorder prediction 265 335 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car15g00221 K01076 ABHD17; abhydrolase domain-containing protein 17 [EC:3.1.2.22] - csv:101208467 660.988
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Car04g02719 Car15g00221 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car02g00842 Car-Chr2:6076645 Car15g00221 Car-Chr15:1235100 7.80E-133 dispersed
Car10g00071 Car-Chr10:319031 Car15g00221 Car-Chr15:1235100 2.23E-170 dispersed
Car11g00052 Car-Chr11:290299 Car15g00221 Car-Chr15:1235100 9.56E-159 dispersed
Car11g01336 Car-Chr11:10976086 Car15g00221 Car-Chr15:1235100 4.22E-170 dispersed
Car14g00631 Car-Chr14:3523628 Car15g00221 Car-Chr15:1235100 1.71E-169 dispersed
Car16g01123 Car-Chr16:9645823 Car15g00221 Car-Chr15:1235100 1.25E-124 dispersed
Car12g00117 Car-Chr12:623145 Car15g00221 Car-Chr15:1235100 7.14E-149 transposed
Car15g00221 Car-Chr15:1235100 Car04g02719 Car-Chr4:21035422 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1004 . . . Bda11g01164 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone9ag0516 . . . . . . . Bda11g01164 . . . . . Cmo04g02953 . . . . Car15g00221 Cpe13g00994 . . . . . . . . . . . . . . . . . Chy09g00382 .
Vvi14g972 . . . . . . Bma14g01391 . . . . . . . . . Cpe13g00994 Bhi06g00322 . . . . . . Cla11g00471 Cam11g0526 Cec11g0519 Cco11g0514 Clacu11g0648 Cmu11g0507 Cre11g0987 Cone11ag0346 Cone18ag1155 . . . Csa05g03058 . . . . . . . . . . . Cmo04g02953 Cmo15g00227 Cma04g02823 Cma15g00215 Car04g02719 Car15g00221 Cpe02g01413 Cpe01g02445 . . . . . . . . . . . . . . Lsi03g00193 . Chy09g00176 Cme09g00191
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000437 3 6 3 3 4 4 5 4 4 4 3 4 5 4 4 4 4 6 3 4 4 4 4 4 4 2 4 6 4 4 121
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car15g00221 Car_Chr15 FPKM 13.802913 17.31295 16.272429 15.751106 10.65761 10.679236 10.760942 18.868603 21.52714 20.0375