Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car15g00226 ATGGGTGCTGTCTGCTGCTGTTTGAGCGTGGAGGATTTCGAAGACTATGTCAATCCAAATAGTTCAGTATATAGGAATTGCACCTGTCTTAGTTGCTTCATTCAGAGCTTCTTAAATGCATACACATTGGTTTTTCGAAGAGGAGAAGTGCATTCTGTCTCTTCATCAATTCAAGGGGCAACACCTATGAGTTCTACAGCATCAACAGATAACTGTTTATCTGAAATGTACCGATCACCTCCAAGGCCATTGCCTTATGATGCTGACCCCAGATATATCCGCTTGCAGCGGGATGGATTAATTTCTAGGCGAGAGAAGGGGTCAAGCCATTTACAAGAGGAGTCGGAGCCTTTAAGAGGTGATGTGGATACAGATTCAGATTCTTTGGGCTCATCTGGCAAATGGAATGGATCTGCTTGTCTTGAGGAATCTAAAGAAATTCTTGGCAAGTCATCTCTAAAGTTCCCATCAACTAAATCTACCACTGGAGTTGGGTATGCTTATACATCCTCTGAAGATGAGGATGTCTGTCCAACGTGTCTTGAAGAATATACTTCCGAGAATCCCAAGATAGTGACGAAATGCTCTCATCATTTTCACCTTGGATGTATCTATGAGTGGATGGAGAGAAGTGATAACTGTCCAGTTTGTGGCAAGGTACGGTTATGGCGTTCGATGAAACGACTTGATGTGCGGAAGAAGGCAGCAGCAACATCTTGGGCATAA 726 43.39 MGAVCCCLSVEDFEDYVNPNSSVYRNCTCLSCFIQSFLNAYTLVFRRGEVHSVSSSIQGATPMSSTASTDNCLSEMYRSPPRPLPYDADPRYIRLQRDGLISRREKGSSHLQEESEPLRGDVDTDSDSLGSSGKWNGSACLEESKEILGKSSLKFPSTKSTTGVGYAYTSSEDEDVCPTCLEEYTSENPKIVTKCSHHFHLGCIYEWMERSDNCPVCGKVRLWRSMKRLDVRKKAAATSWA 241
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 1274735 1277188 + Carg02207-RA Car15g00226 162063
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car15g00226 241 MobiDBLite consensus disorder prediction 103 123 - -
Car15g00226 241 MobiDBLite consensus disorder prediction 103 134 - -
Car15g00226 241 Pfam RING-H2 zinc finger domain 174 217 IPR024766 GO:0008270
Car15g00226 241 ProSiteProfiles Zinc finger RING-type profile. 177 217 IPR001841 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Car04g02713 Car15g00226 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car15g00226 Car-Chr15:1274735 Car08g00813 Car-Chr8:5459295 5.57E-08 dispersed
Car14g01854 Car-Chr14:14378258 Car15g00226 Car-Chr15:1274735 2.67E-25 transposed
Car15g01116 Car-Chr15:8804557 Car15g00226 Car-Chr15:1274735 4.54E-26 transposed
Car15g00226 Car-Chr15:1274735 Car04g02713 Car-Chr4:20987428 6.35E-147 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car15g00226 - - csv:101207736 435.647