Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car15g00242 ATGTTAGCATCATCAGTACCCACAACCAGAACAGAAAGCTTGGTTTGGGCATGTGTAGGCGACAAAGAGACAGAGAAAATCCTATTTCAAGTGTGCTTAAGAAATAACAAAGCAATAGAAGCGGCGGATTGGGTTATCTGCAACACAGTCTATGAGCTCGAGGCAGAAATTTTCAGCATAGCGCCTCGCATTCTCCCAATCGGCCCACTTCTGGCGAGCAATCGACTCGAGAATTCCGTCGGACACTTCTGGCCGGAAGATTCAACTTGCCTGAAATGGCTCGACCAACACTCTCCACGTTCAGTCATTTACGTCGCATTCGGAAGCTTCACAGTTCTAAACAACACCCAATTCCAGGAATTAGCCTCTGGGCTTGAGGTTACCGGCAAGCCATTTCTATGGGTGGTGAGGCCAGACATTACCGAACAAAACCCTAACAATGTCTTCCCATTAGGATTCCAAGAGAGGGTAAAATCTCGCGGAAAGATTGTCGGTTGGGCTCCACAACAAAGGGTTCTTAATCATCCCTCAATCGCTTGCTTTCTCAGCCACTGCGGCTGGAATTCAACCCTCGAGAGCCTCAGCAATGGCGTCCCGTTCCTGTGTTGGCCGTACTTCGCCGATCAATTTCTAAACGAGAGCTACATTTGTGATATCTGGAAGGTGGGGTTGAAATTGAACAAAGACGAACATGGAGTGATCACAAGAACAGAGATTACAGAAAAAGTGGAGAAGCTCCTCGGAGACGAGGAACTGAAACAGAGAATCCAAAAACTGAAGAGAACAGTGTTGAAAAGTGCAGAAAAAGGCGGCGGATCTTACAAGAACTTGAACAATTTCATCAACTGGTTGAAATCATAA 861 46.46 MLASSVPTTRTESLVWACVGDKETEKILFQVCLRNNKAIEAADWVICNTVYELEAEIFSIAPRILPIGPLLASNRLENSVGHFWPEDSTCLKWLDQHSPRSVIYVAFGSFTVLNNTQFQELASGLEVTGKPFLWVVRPDITEQNPNNVFPLGFQERVKSRGKIVGWAPQQRVLNHPSIACFLSHCGWNSTLESLSNGVPFLCWPYFADQFLNESYICDIWKVGLKLNKDEHGVITRTEITEKVEKLLGDEELKQRIQKLKRTVLKSAEKGGGSYKNLNNFINWLKS 286
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 1351221 1352081 + Carg02223-RA Car15g00242 162079

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car15g00242 286 Pfam UDP-glucoronosyl and UDP-glucosyl transferase 99 261 IPR002213 GO:0008194
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car15g00242 - - - cmax:111489545 581.252
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car09g00626 Car-Chr9:3622680 Car15g00242 Car-Chr15:1351221 5.11E-40 dispersed
Car12g00963 Car-Chr12:9726304 Car15g00242 Car-Chr15:1351221 4.80E-41 dispersed
Car15g00242 Car-Chr15:1351221 Car14g01900 Car-Chr14:14625833 1.05E-51 dispersed
Car15g00241 Car-Chr15:1343459 Car15g00242 Car-Chr15:1351221 1.75E-48 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g990 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Car15g00242 Cpe13g00977 . . . . . . . . . . . . . . . . . Chy09g00204 .
Vvi14g1042 . . . . . . . . . . . . . . . . Cpe13g00977 . . . . . . . Cla11g00443 . . . . . . . . Cone2ag0514 . . . . . . . . . . . . . . . . . Cma15g00240 . Car15g00242 . . . . . . . . . . . . . . . . Lsi03g00165 . Chy09g00204 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002843 0 2 0 0 1 1 1 1 1 2 1 0 1 2 1 1 1 4 0 0 2 2 1 3 4 1 2 1 1 11 48
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car15g00242 Car_Chr15 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.299279 0.0 0.0 0.0