Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car15g00248 ATGGAGGCTAAGCTGCTTTTTACTTCCTTCCCTGCAACCTCTGCGGCTCGTCTCTCCAAGCTCTCCACACCCACCTGCGTTTTTGCCTCCTATGGTGGGAAGAATCGTAGGTTTTTGCCTCTCCATTCGAGTTTGCCTCTCCATTCGAGTTTGCCTCTCCATTCGAGTTTGCCTCATGGAGCTGCCCTTCCTTCTGTTCAAGCCTCTGTGGCGTCTGCTGGACCATCACCAAAATCAAGGGTGGACATCAGTGAGAACTTGACCTTAGAGGCAATAAGATCCTCATTAATCTCTCAGGAGGACAGCATTATCTTTAGTCTTTTAGGGAGAGCTCAGTACTGTTATAATGGTGATACATACGACCCCAATGCTTTCTCCATGGATGGCTTCAGTGGCTCTTTAGTGGAGTTCTTGGTCATGGAAACTGAAAAGCTGCATGCCCAGGTACTACATCCTCCGGCAGATTCCATTAATATAAACAGCAAAGTATGGAGCATGTACTTCAGGGATCTGATACCAAGATTAGTGAAGGAAGGAGATGATAGCAATTATGGATCTACTGCTGTTTGTGACACCATTTGCTTGCAGGCTCTATCAAAGAGAATCCATTATGGAAAGTTCGTAGCAGAAGCAAAGTTTCGAGAATCGCCCGATGCGTACGAGGCTGCAATAAGGAAGCAAGACAAAGAGAAACTGATGGAGATGCTGACGTTCCCGATCGTCGAGGAGGCGGTAAAAAGGAGAGTCGAAACGAAAGCGAAAACATTCGGGCAAGAGGTTCCTGTAAACATAGAGGAAACACATGCTGCTCCAGTTTACAAAATAGAACCCAGTTTGGTTGCTGAATTGTATGGAGAATGGATCATGCCATTAACAAAGGAAGTTCAAGTTCAATACTTGTTGAGAAGATTAGATTGA 918 45.42 MEAKLLFTSFPATSAARLSKLSTPTCVFASYGGKNRRFLPLHSSLPLHSSLPLHSSLPHGAALPSVQASVASAGPSPKSRVDISENLTLEAIRSSLISQEDSIIFSLLGRAQYCYNGDTYDPNAFSMDGFSGSLVEFLVMETEKLHAQVLHPPADSININSKVWSMYFRDLIPRLVKEGDDSNYGSTAVCDTICLQALSKRIHYGKFVAEAKFRESPDAYEAAIRKQDKEKLMEMLTFPIVEEAVKRRVETKAKTFGQEVPVNIEETHAAPVYKIEPSLVAELYGEWIMPLTKEVQVQYLLRRLD 305
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 1365817 1367939 + Carg02229-RA Car15g00248 162085

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car15g00248 305 ProSiteProfiles Chorismate mutase domain profile. 80 305 IPR008238 GO:0004106|GO:0009073
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car15g00248 K01850 E5.4.99.5; chorismate mutase [EC:5.4.99.5] - csv:101203315 444.506
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Car11g00975 Car15g00248 CCT
Car11g00975 Car15g00248 ECH
Car04g02687 Car15g00248 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car11g00975 Car-Chr11:6511393 Car15g00248 Car-Chr15:1365817 4.78E-116 transposed
Car15g00248 Car-Chr15:1365817 Car04g02687 Car-Chr4:20847166 2.35E-125 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g986 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cmo04g02921 . . . . Car15g00248 Cpe13g00970 . . . . . . . . . . . . . . . . . Chy09g00214 .
Vvi14g1594 Blo10g00146 . . . . . Bma14g01444 Bma13g00173 . Cmo11g01200 . . Car11g00975 . Sed11g2034 . Cpe13g00970 Bhi06g00362 Tan11g0456 Cmetu09g1862 . Hepe02g2106 . Lcy10g2042 . . . . . . . . . Cone2ag0534 Cone16ag0482 . Csa05g03018 . . . . Bda07g01334 Bda12g00176 Bpe11g00065 Bpe11g01440 . . . Cmo04g02921 Cmo15g00257 Cma04g02789 Cma15g00247 Car04g02687 Car15g00248 Cpe04g00181 Cpe01g02416 Bhi11g02936 . . . . . . . . . . . . . . Csa03g03794 Chy09g00214 Cme09g00233
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001686 1 4 1 3 2 2 3 2 2 2 2 2 3 2 2 3 2 4 3 2 2 2 2 2 2 2 2 3 4 2 70
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car15g00248 Car_Chr15 FPKM 19.303747 20.627672 15.448294 14.364202 6.557637 7.844408 6.131325 19.482145 18.814077 16.556524