Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car15g00249 ATGTTCCCAAACCTCAAATCCCCAAATTGGGAGCACTTTTGTAAGAAACAGAGAAATTCAGAGACTGAGGAGGAGCTGAACCAAAAAAGAAACACAAGCACAGCTTCATCAATGGCTAAGAACAAGGACGACCACTCTGCCAGACCTCCACCCCGCCCGACTATCACTCTGCCACCACGTCCTTCCATGGAGGCCTTTTTTGCTGGTGGACCCACTGGGCTTAGCCCTGGCCCTATGACTCTCGTCTCTAGTTTCTTCGCCGACGCTGCCGTTGACTCGCCGTCTTTCTCCCAGCTTCTCGCCGGAGCCATGGCCTCTCCGATAGCTATGGGGTTTTTGGGAACTGGGTCTACGCCCAATTCGGAATCGGAATTTGGGTTGAAGCAATCGAAGCCGATGAATTTAGTCGTGGCTCGGTCTCCTTTGTTCTCGGTCCCGCCGGGGCTTAGCCCTTCTGGGTTGCTTAATTCGCCGGGGTTTTATCCTCCCCAGAGTCCGTTCGGGATGTCGCACCAGCAGGCATTGGCTCAGGTGACTGCTCAAGCGGCATTGGCGCACTCTCATATGCATATGCAGCAAGCTGAATATCAACATTCCTCAATACCAGTTTCTACCGAACCGTTGATACGCGATCCATCGTTTACTCTTGATGAAGCATCTCTGCAGTTAATATTACCCTCCACGTCCGATACGAAAAGTCTCGTTCCAGAATCGACAGAAGTCTCTCATCCTGATAGAAAATATCAACCTCCTCCTCCACATGCTGCCTCTGATAAACCTGCAGATGATGGCTATAACTGGCGTAAATATGGACAGAAGTTGGTTAAGGGCAGTGAATATCCACGAAGCTATTACAAATGCACTCATTTGAATTGCCCCGTAAAGAAGAAGATCGAACGCTCACCTGATGGACAAATTACTGAAATTATTTACAAAGGCCAGCACAACCATGAACGTCCTCCAGCCAACAAACGCGCTCGAGATAATAGCGAACCGACTGGATGTGCAAATTCTTCGACGAAGCTTGAATGTGGTTTGCAAAATCAAGCGGGAATTTTGAACAAGTCGAGTGAAAATGTGCAAGTTGGATCTAGTGACAGTGAAGAACAAGGTGATACAGAGATAACGGATGACAGAGATGAAGATGAGCCAAATCCAAAGAGGCAGAACATTGAAGCAGGGACATCTGGGGTTGCCTTGTCTCATAAGACACTCACAGAACCAAAAATCATTGTTCAAACAAGAAGTGAGGTTGACCTGTTAGATGATGGTTATAGGTGGCGCAAGTATGGGCAGAAAGTGGTTAAAGGAAATCCTAATCCGAGGAGCTACTACAAATGCACTAGTGCTGGGTGCAACGTCCGAAAGCATGTCGAGAGGTCTTCAACGGACTCGAAAGCTGTCGTAACTACGTACGAAGGGAAACATAACCATGATGTTCCAGCAGCTAGAAACAGCAGCCACCACACAGTCAACAGTACCGTGCACCAGATCAAACCACATAAAGTTGTAGCTCAAAAACATCCATTACTCAAAGAGTTGGAATTTGGAAGTAACGAGCAGAGACGTGCCGTTTTGCGGCTGAAAGAAGAGAAAATCACCGTGTAA 1608 47.7 MFPNLKSPNWEHFCKKQRNSETEEELNQKRNTSTASSMAKNKDDHSARPPPRPTITLPPRPSMEAFFAGGPTGLSPGPMTLVSSFFADAAVDSPSFSQLLAGAMASPIAMGFLGTGSTPNSESEFGLKQSKPMNLVVARSPLFSVPPGLSPSGLLNSPGFYPPQSPFGMSHQQALAQVTAQAALAHSHMHMQQAEYQHSSIPVSTEPLIRDPSFTLDEASLQLILPSTSDTKSLVPESTEVSHPDRKYQPPPPHAASDKPADDGYNWRKYGQKLVKGSEYPRSYYKCTHLNCPVKKKIERSPDGQITEIIYKGQHNHERPPANKRARDNSEPTGCANSSTKLECGLQNQAGILNKSSENVQVGSSDSEEQGDTEITDDRDEDEPNPKRQNIEAGTSGVALSHKTLTEPKIIVQTRSEVDLLDDGYRWRKYGQKVVKGNPNPRSYYKCTSAGCNVRKHVERSSTDSKAVVTTYEGKHNHDVPAARNSSHHTVNSTVHQIKPHKVVAQKHPLLKELEFGSNEQRRAVLRLKEEKITV 535
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 1369138 1372728 + Carg02230-RA Car15g00249 162086
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car15g00249 535 MobiDBLite consensus disorder prediction 312 326 - -
Car15g00249 535 Pfam WRKY DNA -binding domain 262 318 IPR003657 GO:0003700|GO:0006355|GO:0043565
Car15g00249 535 Pfam WRKY DNA -binding domain 422 478 IPR003657 GO:0003700|GO:0006355|GO:0043565
Car15g00249 535 ProSiteProfiles WRKY domain profile. 256 320 IPR003657 GO:0003700|GO:0006355|GO:0043565
Car15g00249 535 MobiDBLite consensus disorder prediction 1 63 - -
Car15g00249 535 MobiDBLite consensus disorder prediction 311 342 - -
Car15g00249 535 MobiDBLite consensus disorder prediction 227 265 - -
Car15g00249 535 MobiDBLite consensus disorder prediction 356 400 - -
Car15g00249 535 ProSiteProfiles WRKY domain profile. 416 481 IPR003657 GO:0003700|GO:0006355|GO:0043565
Car15g00249 535 MobiDBLite consensus disorder prediction 11 28 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Car04g02685 Car15g00249 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car14g00022 Car-Chr14:149155 Car15g00249 Car-Chr15:1369138 4.52E-77 dispersed
Car15g00249 Car-Chr15:1369138 Car16g00952 Car-Chr16:7891861 1.05E-15 dispersed
Car11g00839 Car-Chr11:5035303 Car15g00249 Car-Chr15:1369138 1.95E-15 wgd
Car15g00249 Car-Chr15:1369138 Car18g01035 Car-Chr18:10686288 1.69E-139 wgd
Car15g00249 Car-Chr15:1369138 Car04g02685 Car-Chr4:20835857 0 wgd
Car15g00249 Car-Chr15:1369138 Car04g01723 Car-Chr4:9876573 5.78E-149 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
4782 PF03106 WRKY 3.50E-25 CL0274 Car TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car15g00249 - - cmos:111445028 1060.83