Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car15g00256 ATGAAGTTCGGGAAGGAATTTTTGTCTCAAATGGTGCCGGAATGGCAAGAGGCATACCTGGATTACAGCCATCTGAAAACAGTGTTGAAAGAAGTCAGCCGGGCGAGACAGCCAGAGGCATCCAACGGGACAACGCGCAACTTGAAGAGAAGGGTCTCTCTGTACAGAGCTTTCAGCGGGCTAGCAGGACCGAGACGCTCTCAACAGATGCAGGAGGATGCTATACATACAAACATAATTCATACAGGGTCTGAAGAGTGTTACCAGAGCATGCTGTTCGCTTCATCGTCGGAGCAAAGCGATGAACATCAGGTGGAGTTCTTCAGGAGACTTGATGATGAGTTTAATAAAGTGGTGGGGTTTTACAAGAAGGAAGTGGCGGAGCTGATGGGGGAGGCTGAGGAGTTGAGCAAGCAGATAGATATCTTGATTGCGCTGCGGATTAAGGTAGAGCAGCCAGATATTGCTCTTGAAGATTTTAATGAAAGTGTCAGTCTTACAGTAACAAAGATGAACGTATTTGTAGAACGGTCAAGCTTGGAGGTAACCCAAGAAGTTGAGATGGAAACTAGAGAAGCAAAAAGTAACAGCAGGAAGGCCAGTGGAGGAATAGCTCATCCTACCATTCAAAAACTCAAGTTAGAGTTGTTGTCCCAAGTACGGATTAATGTCCACCCCGAAACGCCAATATCGACATTAAAATGTATGGTCATGAGTTCCAAATCTCAGTTGTCTTATAACAAGACAGAGTTGAGGAAGGCAGAAGAACTGATGAAGCGTGCCTTCATTGAATTCTACCAAAAGCTTCGAGTTCTAAAAGGCTACAGTTTGTTGAATAAACTGGCCGTTTCGAAGATCATGAAGAAATATGATAAGATTACATCACGTAAAGCATCGAAGGCCTACCTCGAAATGGTGGAAAAATCTCCTCTTGGCAGCATTCTTGAGAGTCAAGGGCGTGGGCAGTACATGGATAACATATTTCCTCTCTATAGCCTTTTTGGATTCATTGTCTTGCACATGCTGATATACTCTGCAAATCTATACTTTTGGAGGCGTTACCATGTAAACTACACCCTTATGTTTGGCTTCAAGCAAGGGACGGAGTTGGGTTACTGGGAGGTCTTTTTTCTTAGTTCAGGTCTTGCTGTGATCACAATGGCTTGCATCCTCTCCAATTTGGACATGGAAGCAGACCCCAGAACCCGAACCTTTGCGGCCATAACTGAATCAGTCCCTTTGGCTCTACTCATTGCCCTTCTTTTCTTAATATTCTGTCCTTTCGACATCCTATTCCGTCCCAGCCGCTTCTTCCTCATTCGCAGCGCATTTCATTTGGTCTGTGCTCCTTTATACAAGGTTAGCCTCCAAGACTTTTTCTTGGCAGACCAGCTCACTAGCCAGGTTCAAGCGTTCAGAAGTTTACAATTCTACGTCTGCTACTATGGGTGGGGGGATTTCATACGAAGATCAAATAAGTGCTTCGAGAGCAGAATTTTCGAAGCTTTTTACTTTGTTGTTGCAATTATTCCATACTGGATTCGTACTCTTCAGTGCCTTCGACGTTTGGTGGAAGAGAAAGATGTAGAACATGTATTTAATGGACTGAAATACTTCTCAACAATCGTTGCAATTGCAATGAGAACAGGCCATGATTTGAATATGGGGATGATTTGGAGAATTTTAGCGGCAATTAGTTCTGGTACTGCAACAATTTCAGGCACATATTGGGACATAGTTCAAGATTGGGGACTTCTCCAACGAAACTCGAAAAATCCATGGTTGAGAGACAAACTATTGATATCCAACAAAAATGTTTACTATGTAGCAATTGGACTGAATATCTTGTTGAGACTCGCTTGGATGCAATCAGTATTAGGTTTCAGAGAAGCTCCATTTATCCACAGACAAGCCTTGATCGCCATTGTCGCCGTGCTGGAAATCATTCGACGAGGAATTTGGAACTTCTTCAGGATGGAGAATGAACACCTGAACAATGTGGGGAAGTTCAGAGCATTCAACTCTGTGCCATTACCTTTCGAATTCGACGACAACAACAACAAAATGAGAACTCGACTATGA 2082 43.42 MKFGKEFLSQMVPEWQEAYLDYSHLKTVLKEVSRARQPEASNGTTRNLKRRVSLYRAFSGLAGPRRSQQMQEDAIHTNIIHTGSEECYQSMLFASSSEQSDEHQVEFFRRLDDEFNKVVGFYKKEVAELMGEAEELSKQIDILIALRIKVEQPDIALEDFNESVSLTVTKMNVFVERSSLEVTQEVEMETREAKSNSRKASGGIAHPTIQKLKLELLSQVRINVHPETPISTLKCMVMSSKSQLSYNKTELRKAEELMKRAFIEFYQKLRVLKGYSLLNKLAVSKIMKKYDKITSRKASKAYLEMVEKSPLGSILESQGRGQYMDNIFPLYSLFGFIVLHMLIYSANLYFWRRYHVNYTLMFGFKQGTELGYWEVFFLSSGLAVITMACILSNLDMEADPRTRTFAAITESVPLALLIALLFLIFCPFDILFRPSRFFLIRSAFHLVCAPLYKVSLQDFFLADQLTSQVQAFRSLQFYVCYYGWGDFIRRSNKCFESRIFEAFYFVVAIIPYWIRTLQCLRRLVEEKDVEHVFNGLKYFSTIVAIAMRTGHDLNMGMIWRILAAISSGTATISGTYWDIVQDWGLLQRNSKNPWLRDKLLISNKNVYYVAIGLNILLRLAWMQSVLGFREAPFIHRQALIAIVAVLEIIRRGIWNFFRMENEHLNNVGKFRAFNSVPLPFEFDDNNNKMRTRL 693
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 1401596 1405306 + Carg02237-RA Car15g00256 162093

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car15g00256 693 Pfam EXS family 328 664 IPR004342 GO:0016021
Car15g00256 693 Coils Coil 119 146 - -
Car15g00256 693 Pfam SPX domain 1 306 IPR004331 -
Car15g00256 693 ProSiteProfiles SPX domain profile. 1 304 IPR004331 -
Car15g00256 693 ProSiteProfiles EXS domain profile. 495 690 IPR004342 GO:0016021
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car15g00256 - - - cmo:103498504 956.436
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Car15g00256 Car18g01042 CCT
Car15g00256 Car18g01042 ECH
Car04g02676 Car15g00256 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car15g00256 Car-Chr15:1401596 Car18g01044 Car-Chr18:10748549 1.46E-171 dispersed
Car15g00256 Car-Chr15:1401596 Car15g00257 Car-Chr15:1406802 3.37E-125 tandem
Car15g00256 Car-Chr15:1401596 Car18g01042 Car-Chr18:10741170 1.69E-55 wgd
Car15g00256 Car-Chr15:1401596 Car04g02676 Car-Chr4:20798017 3.12E-126 wgd
Car15g00256 Car-Chr15:1401596 Car04g01715 Car-Chr4:9825448 2.06E-59 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g964 . . . . . . . . . Cmo18g01150 . Cma18g01128 . Car18g01042 Sed06g1507 . . Bhi07g01530 Tan04g1051 Cmetu06g0752 Lac13g0343 Hepe10g1767 . . Cla05g02420 Cam05g2601 Cec05g2632 Cco05g2672 Clacu05g2602 Cmu05g2456 Cre05g2572 . . . . Lsi04g00392 . Chy10g01029 Cme10g00389 . . . . . . . . . . . . . . Car15g00256 Cpe13g00964 . . . . . . . . . . . . . . . . . Chy09g00228 .
Vvi14g1575 Blo10g00142 Blo11g00573 . . . . . . . . . . . . . . Cpe13g00962 Bhi06g00375 Tan11g0488 . . . . . . . . . . . . . . . . Lsi02g01467 Csa05g02482 . . . . . Bda12g00171 . . . . . Cmo04g02908 Cmo15g00265 Cma04g02778 Cma15g00253 Car04g02676 Car15g00256 . Cpe01g02407 . . . . . . . Cla09g01763 Cam09g1854 . Cco09g2009 . . Cre01g0655 . . Chy09g00228 Cme09g00246
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000170 6 7 5 5 5 5 11 5 5 5 6 5 10 5 5 10 5 0 5 5 5 8 5 7 8 5 5 12 17 6 193
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car15g00256 Car_Chr15 FPKM 7.069684 8.81535 7.320359 5.782639 5.933463 5.556551 7.345832 3.076151 2.874371 3.413985