Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car15g00257 ATGAAGTTCGGGAAGGAGTTTTTGTCCCAAATGGTGCCGGAATGGCAAGAAGCGTACTTGGATTACAATAATCTGAAATCAATTTTGAAAGAAGTAAGCATATCTAGGCAGCCAAAAGCTCCGGATGCCTCAGGAAAGCTAAAGAGAAAGATGTCATTATATAGAGCTTTCAGTGGGCTTACAACGCAGAGGAATTCTCCAAGGAAGCAGGATGATGCAATCATCACAAACATAGTTCATAATGGTTCTGAAGAGAGCTATCAGAGCATGTTCTTTATGTCATCTGACCAAGGAGGTGGAAATGAGGTGCTATTCTTTAGGGAACTTGATGCTGAGTTCAATAAGGTGGTGAGGTTTTACAAGAAGAAAGTGGGGGAGCTGACGGTGGAGGCTGAGGAATTGAGCAAACAGATGGATATTTTGGTTGCTCTAAGGATTAAGGTGGAGAAACCAGATGTTGCTTCCAATGATGTCGATGAACCTGTCGATCTAGCAGGAACTGCAGCCTCCTCAACTGTTAATTCCATCAATGGAAGAAGTACAGATTGTGTTTTAGAAGGACGGTCGCGCTTCGAAATAACTCAGGAAGTTGAGACGGTAGACGAGGAGATGGAAGCAAAAGAGGGCAACAGTTACAGCAGGAAGGGGAGTAGGGGAACAACTCAAACCATTCAAGAACACAGGCCAGCTTCATTAGACTTGTTACCCCATGTAAGGATTAATATCGCTCCTGAAACACCAGTATCAACCTTGAAATACATGGTTGCGAGTTCCAAAGCTGGGTTATCATATAAGAAAACGGAGTTGAGGAAGTCAGAAGAATTGATGACTCGGGCCTTGATTGAATTCTACCAAAAGCTTCAAGTTCTAAAAGGTTACAGCTTCTTAAACATATTGGCTGTTTCGAAGATCGTGAAGAAGTATGATAAGATAACGTCACGTCGAGCGTCGAAGGTCTACTTAGAAATGGTGGATAAATCTCCTCTTGGCAGCACTATGGAGGTCACACGGCTCATAGAAAGAGTGGAGGCTGTTTTCATTAAGCACTTTGCAAATGGAAACCGAAGAAAAGGGATGGACATTCTGAGAAGAAAAATCAGAAGGGAAAAACATGGAATTACGTTTTTCTCTGGGGTTTTCTTCGGCTGTGCCATGGCACTTGTAGCGGCCATTATTGTAGTGATACACCTAAGAAATATCTTTGAGAGCACAGGGCGCAGCCAGTACATGGATAACATATTTCCTCTGTATAGCCTTTTTGGATTCATCATCTTGCACTTGATGATGTACTCTGGAAATATATACTTTTGGAGGCGTTACCGTGTCAATTACTCATTTATGTTTGGCTTCAAGCAAGGGACAGAGTTGAGTCACCGGGAGGTCTTTTTTCTCAGTACAGGTCTTGCTGTGCTCACATTGGCTTGTGTTCTCTCACATTTGGACATGGAGGTGGACCTGAAAACCAAAAGATTTGAAGCTATAACCGAGTCAATTCCTCTAGCTCTACTCACTGTTCTTCTTCTTATAATATTTTGTCCTTTTGATATCATATTCCGCTCCAGCCGCTTCTTCCTAATTCGTAGTGCATTTCATCTGGTCTGTACACCGTTCTACAAGGTTACACTCGAAGACTTTTTCTTGGCAGATCAGCTGACCAGCCAGGTGCAAGCCTTCAGAAGTTTAGAATTCTATATCTGTTACTACGGGTGGGGCGACTTTATACGAAGATCGAATACATGCAAAGAGGACAAAGTTTTTGAAGCCTTTTACTTTGTTGTTGCAATTATTCCATATTGGATCCGTACTCTTCAGTGCCTCCGGCGCTTGATCGAAGAGAAAGACGTGATGCATGTGTTTAATGGACTGAAGTACTTCTCAACGGTCATTGCAGTTGCTATGAGAACTGGCAATGATTTGAATATGGGGATGACTTGGAGAAACTTGGCTGCTGTTAGTTCTGTTATTGCAACAATTTCAGGCACGTACTGGGATATAGTATGGGATTGGGGTCTTCTGCGACGAAACTCGAAAAATCCATGGTTGAGAGACAAACTAGTGATATCCAACAAAAGTGTTTACTTTGCAGCAATTGTACTGAATATCTTGCTACGACTTGCTTGGATGCAATCCGTATTAGGCTTTAGAGAAGCTCCATTCATCCATAGGCAAGCCTTAATTGCGATCGTCGCCGTGTTGGAGATTATTCGACGAGGAATCTGGAATTTCTTCAGGTTGGAGAATGAGCACCTAAACAATGTGGGGAAATACAGGGCATTCGATTCTGTTCCACTTCCTTTCGATTACGACGAGATGGTGCGATGA 2322 42.68 MKFGKEFLSQMVPEWQEAYLDYNNLKSILKEVSISRQPKAPDASGKLKRKMSLYRAFSGLTTQRNSPRKQDDAIITNIVHNGSEESYQSMFFMSSDQGGGNEVLFFRELDAEFNKVVRFYKKKVGELTVEAEELSKQMDILVALRIKVEKPDVASNDVDEPVDLAGTAASSTVNSINGRSTDCVLEGRSRFEITQEVETVDEEMEAKEGNSYSRKGSRGTTQTIQEHRPASLDLLPHVRINIAPETPVSTLKYMVASSKAGLSYKKTELRKSEELMTRALIEFYQKLQVLKGYSFLNILAVSKIVKKYDKITSRRASKVYLEMVDKSPLGSTMEVTRLIERVEAVFIKHFANGNRRKGMDILRRKIRREKHGITFFSGVFFGCAMALVAAIIVVIHLRNIFESTGRSQYMDNIFPLYSLFGFIILHLMMYSGNIYFWRRYRVNYSFMFGFKQGTELSHREVFFLSTGLAVLTLACVLSHLDMEVDLKTKRFEAITESIPLALLTVLLLIIFCPFDIIFRSSRFFLIRSAFHLVCTPFYKVTLEDFFLADQLTSQVQAFRSLEFYICYYGWGDFIRRSNTCKEDKVFEAFYFVVAIIPYWIRTLQCLRRLIEEKDVMHVFNGLKYFSTVIAVAMRTGNDLNMGMTWRNLAAVSSVIATISGTYWDIVWDWGLLRRNSKNPWLRDKLVISNKSVYFAAIVLNILLRLAWMQSVLGFREAPFIHRQALIAIVAVLEIIRRGIWNFFRLENEHLNNVGKYRAFDSVPLPFDYDEMVR 773
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 1406802 1411828 + Carg02238-RA Car15g00257 162094

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car15g00257 773 Pfam SPX domain 1 324 IPR004331 -
Car15g00257 773 MobiDBLite consensus disorder prediction 200 224 - -
Car15g00257 773 ProSiteProfiles SPX domain profile. 1 322 IPR004331 -
Car15g00257 773 Coils Coil 117 137 - -
Car15g00257 773 Pfam EXS family 414 750 IPR004342 GO:0016021
Car15g00257 773 ProSiteProfiles EXS domain profile. 581 773 IPR004342 GO:0016021
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car15g00257 - - - csv:101212473 1294.64
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Car15g00257 Car18g01044 CCT
Car15g00257 Car18g01044 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car04g02676 Car-Chr4:20798017 Car15g00257 Car-Chr15:1406802 0 dispersed
Car06g01123 Car-Chr6:8393936 Car15g00257 Car-Chr15:1406802 1.60E-152 dispersed
Car14g01638 Car-Chr14:13119109 Car15g00257 Car-Chr15:1406802 1.37E-154 dispersed
Car15g00257 Car-Chr15:1406802 Car18g01042 Car-Chr18:10741170 0 dispersed
Car15g00256 Car-Chr15:1401596 Car15g00257 Car-Chr15:1406802 3.37E-125 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g962 . . . . . . . . . Cmo18g01153 . Cma18g01131 . Car18g01044 Sed07g1954 Cpe09g00196 . Bhi07g01532 Tan04g1053 Cmetu10g1096 Lac13g0340 Hepe10g1766 . . Cla05g02421 Cam05g2603 Cec05g2635 Cco05g2674 Clacu05g2604 Cmu05g2457 Cre05g2573 . . . . Lsi04g00395 . Chy10g01027 Cme10g00391 . . Bda07g01518 . . . . . . Cmo04g02908 . . . . Car15g00257 Cpe13g00962 . . . . . . . . . . . . . . . . . Chy09g00229 .
Vvi14g1574 . . . . . . Bma14g01453 Bma13g00154 . . . . . . . . . Bhi06g00377 Tan11g0492 . . . . Lcy10g2019 . . . . . . . . . . . Lsi02g01468 Csa05g02480 . . . . Bda07g01343 . Bpe11g00072 Bpe11g01450 . . . . Cmo15g00267 . Cma15g00255 . Car15g00257 . . . . . . . . . Cla09g01765 Cam09g1855 Cec09g1917 Cco09g2010 . . Cre01g0654 . . Chy09g00229 Cme09g00247
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000170 6 7 5 5 5 5 11 5 5 5 6 5 10 5 5 10 5 0 5 5 5 8 5 7 8 5 5 12 17 6 193
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car15g00257 Car_Chr15 FPKM 0.583333 0.616297 3.582045 5.056005 5.359275 1.795664 7.062117 7.130278 6.363835 13.868573