Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car15g00262 ATGGCTTCATTGGGGATCATAATCCTCTTAGTGGGTGTTTCTTGGATGGTGTCGTGTGTTAATGGCGATTATGGGGGTTGGATCAACGCGCACGCCACTTTCTATGGTGGCAGTGATGCATCTGGGACAATGGGGGGGGCTTGTGGGTATGGAAATTTATACAGCCAAGGGTATGGAACCAACACTGCAGCGCTAAGCACGGCGCTGTTTGACAATGGCCTTAGCTGTGGCGCTTGCTTTGAGCTGCGCTGTGTCAACGACCCACAGTGGTGTATTCCAGGCACTATTGTTGTCACTGCCACTAACTTCTGCCCTCCTGGCGGCTGGTGCGACCCTCCCAACCACCATTTCGACCTGTCTCAGCCTATCTTCCAACACATTGCCCAATATCGTGCCGGAATTGTCCCCGTGGCTTACCGCAGGGTAAGGTGCAGAAGAAGTGGGGGGATAAGATTTACAATCAACGGCCATTCATATTTCAATTTGGTACTAGTGACCAACGTGGGGGGTGCTGGAGATATACATTCAGTAGCGATTAAGGGCTCGAGGACCCGATGGCAACCCATGTCAAGAAATTGGGGCCAAAATTGGCAGTCCAACTCTTATCTGAACGGACAGAGTCTCTCCTTTCTGGTGACAGCCAGCGACGGGCGACAAGTGCTGTCCTACAACGTGGCTCCCTCCGGCTGGTCCTTCGGACAGACATACGTGGGCGCACAGTTCCGCTATTAA 732 52.73 MASLGIIILLVGVSWMVSCVNGDYGGWINAHATFYGGSDASGTMGGACGYGNLYSQGYGTNTAALSTALFDNGLSCGACFELRCVNDPQWCIPGTIVVTATNFCPPGGWCDPPNHHFDLSQPIFQHIAQYRAGIVPVAYRRVRCRRSGGIRFTINGHSYFNLVLVTNVGGAGDIHSVAIKGSRTRWQPMSRNWGQNWQSNSYLNGQSLSFLVTASDGRQVLSYNVAPSGWSFGQTYVGAQFRY 243
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 1437362 1438492 + Carg02243-RA Car15g00262 162099
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car15g00262 243 Pfam Expansin C-terminal domain 150 227 IPR007117 -
Car15g00262 243 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 45 149 IPR007112 -
Car15g00262 243 PANTHER EXPANSIN-A5 10 242 - -
Car15g00262 243 Gene3D - 149 241 IPR036749 -
Car15g00262 243 PRINTS Expansin/Lol pI family signature 26 41 IPR007118 GO:0005576
Car15g00262 243 PRINTS Expansin/Lol pI family signature 44 62 IPR007118 GO:0005576
Car15g00262 243 PRINTS Expansin/Lol pI family signature 66 84 IPR007118 GO:0005576
Car15g00262 243 PRINTS Expansin/Lol pI family signature 132 148 IPR007118 GO:0005576
Car15g00262 243 PRINTS Expansin/Lol pI family signature 186 200 IPR007118 GO:0005576
Car15g00262 243 PRINTS Expansin/Lol pI family signature 224 238 IPR007118 GO:0005576
Car15g00262 243 PRINTS Expansin signature 57 71 IPR002963 GO:0009664
Car15g00262 243 PRINTS Expansin signature 84 95 IPR002963 GO:0009664
Car15g00262 243 PRINTS Expansin signature 96 106 IPR002963 GO:0009664
Car15g00262 243 PRINTS Expansin signature 107 124 IPR002963 GO:0009664
Car15g00262 243 PRINTS Expansin signature 124 137 IPR002963 GO:0009664
Car15g00262 243 PRINTS Expansin signature 148 160 IPR002963 GO:0009664
Car15g00262 243 PRINTS Expansin signature 160 181 IPR002963 GO:0009664
Car15g00262 243 PRINTS Expansin signature 195 216 IPR002963 GO:0009664
Car15g00262 243 PRINTS Expansin signature 224 240 IPR002963 GO:0009664
Car15g00262 243 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 159 238 IPR007117 -
Car15g00262 243 Gene3D - 13 145 IPR036908 -
Car15g00262 243 PANTHER EXPANSIN-A15 10 242 IPR002963 GO:0009664
Car15g00262 243 SUPERFAMILY Barwin-like endoglucanases 26 167 IPR036908 -
Car15g00262 243 Pfam Lytic transglycolase 62 139 IPR009009 -
Car15g00262 243 SUPERFAMILY PHL pollen allergen 146 237 IPR036749 -
Car15g00262 243 SMART dpbb_1 62 139 IPR007112 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Car15g00262 Car18g01051 CCT
Car15g00262 Car18g01051 ECH
Car04g01707 Car15g00262 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car10g00188 Car-Chr10:902985 Car15g00262 Car-Chr15:1437362 2.67E-130 dispersed
Car11g00157 Car-Chr11:869855 Car15g00262 Car-Chr15:1437362 1.25E-135 dispersed
Car15g00175 Car-Chr15:932957 Car15g00262 Car-Chr15:1437362 8.86E-127 dispersed
Car15g00262 Car-Chr15:1437362 Car04g00193 Car-Chr4:1056885 5.78E-119 dispersed
Car01g00733 Car-Chr1:4473173 Car15g00262 Car-Chr15:1437362 1.00E-114 wgd
Car15g00262 Car-Chr15:1437362 Car18g01051 Car-Chr18:10776371 6.45E-118 wgd
Car15g00262 Car-Chr15:1437362 Car04g01707 Car-Chr4:9792612 1.66E-138 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car15g00262 K20628 - csv:101220358 470.7