Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Car15g00270 | ATGTTTAGAGAGCTTTGTGCTTTTCAAAGAGCCATGGATTTAGCCCCACCTCCCACCACTACTACAACCACGGCTAATAGCACCAAATCTCCCGACCCAGACTCCGACACTCCCACACGCTTCCCGCCGTCGTCTTCGGCCAAGTCGCTGCCTTTCACCAACGGCCTTCTCAAGCGCCACAACCACGCCCCTCAACCCACCCTCCTTGTTTCTTACAAAGAATGTCTCAAAAACCACGCGGCCAGTTTAGGAGCTCACGCGTTGGACGGATGTGGGGAATTTATGCCTTCCCCATCTGCCTCTTCCATTGATCCCACTTCGCTCAACTGCGCCGCATGCGGCTGCCACCGGAATTTCCACCGCCGTGATCCGGAGGATCCGATCTCTACTTTACCCATCAATACAGCAACCACTCATGTCATCGAGTATCAACCCCACCATCGTCATCACCCACCACCGCCCGGGACGCGGAGCCCGAATTCAGCATCTCCGCCGCCGATCTCGTCGTCGTACTACCCATCAGCACCGCACATGTTACTAGCGCTTTCCGCCGGGTTGTCGGCTCATCCACCGGAAATCGGACGCGCGAAAAATTTAAACGCTCGGAAACGATTCAGGACGAAATTCAGCAACGAACAGAAGGAAAAAATGCTCCATTTTGCAGAACAAGTGGGATGGAAAATGCAAAAGCGAGACGAGGATTTGGTCCGAAATTTTTGCAATCAAGTTGGAGTTGAAAGAGGGGTTCTTAAAGTATGGATGCATAACAATAAGAACACCATGGGCAAAAAAACTGATTCCAATGACACCACCCCCACACCCACCACAACCACCACCGCCGCCGCCACTGCCGTCGTCAATATCAACGACAACGACGATGAAGACGAACCAGACGGCGGCTTCCATATGCATATTGGATCAAATGGAAGATCAGAAGAACCCTCGAGAGACACTGAGGCTTCCTCTTTCACAGTAAGGAGTGTTAGATATGGGGAGTGCCAAAAGAACCACGCTGCGAGTGTCGGAGGGTACGCCGTCGATGGGTGTCGAGAATTCATGGCAAGCGGCGATGAAGGTACGACTTCTGCACTGACTTGCGCTGCCTGTGGTTGCCACCGGAGTTTCCATAGAAGGCAAGTTGGAACGGAGGTAGTCAGTGATTGCTCGTCGTCTCCCTCAAACGAAACTTAA | 1191 | 52.64 | MFRELCAFQRAMDLAPPPTTTTTTANSTKSPDPDSDTPTRFPPSSSAKSLPFTNGLLKRHNHAPQPTLLVSYKECLKNHAASLGAHALDGCGEFMPSPSASSIDPTSLNCAACGCHRNFHRRDPEDPISTLPINTATTHVIEYQPHHRHHPPPPGTRSPNSASPPPISSSYYPSAPHMLLALSAGLSAHPPEIGRAKNLNARKRFRTKFSNEQKEKMLHFAEQVGWKMQKRDEDLVRNFCNQVGVERGVLKVWMHNNKNTMGKKTDSNDTTPTPTTTTTAAATAVVNINDNDDEDEPDGGFHMHIGSNGRSEEPSRDTEASSFTVRSVRYGECQKNHAASVGGYAVDGCREFMASGDEGTTSALTCAACGCHRSFHRRQVGTEVVSDCSSSPSNET | 396 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
15 | 1466885 | 1470846 | + | Carg02251-RA | Car15g00270 | 162107 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Car15g00270 | 396 | MobiDBLite | consensus disorder prediction | 12 | 59 | - | - | |
Car15g00270 | 396 | ProSiteProfiles | Zinc-finger ZF-HD dimerization-type profile. | 330 | 379 | IPR006456 | - | |
Car15g00270 | 396 | ProSiteProfiles | Zinc-finger ZF-HD dimerization-type profile. | 72 | 123 | IPR006456 | - | |
Car15g00270 | 396 | MobiDBLite | consensus disorder prediction | 260 | 279 | - | - | |
Car15g00270 | 396 | MobiDBLite | consensus disorder prediction | 144 | 170 | - | - | |
Car15g00270 | 396 | MobiDBLite | consensus disorder prediction | 15 | 52 | - | - | |
Car15g00270 | 396 | Pfam | ZF-HD protein dimerisation region | 70 | 124 | IPR006456 | - | |
Car15g00270 | 396 | Pfam | ZF-HD protein dimerisation region | 328 | 379 | IPR006456 | - | |
Car15g00270 | 396 | MobiDBLite | consensus disorder prediction | 289 | 323 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Car10g00178 | Car-Chr10:851558 | Car15g00270 | Car-Chr15:1466885 | 1.36E-15 | dispersed | |
Car15g00270 | Car-Chr15:1466885 | Car04g01920 | Car-Chr4:11409919 | 9.58E-20 | dispersed | |
Car01g00724 | Car-Chr1:4433902 | Car15g00270 | Car-Chr15:1466885 | 6.56E-17 | wgd | |
Car11g00862 | Car-Chr11:5329178 | Car15g00270 | Car-Chr15:1466885 | 6.33E-15 | wgd | |
Car14g00535 | Car-Chr14:2939620 | Car15g00270 | Car-Chr15:1466885 | 9.50E-14 | wgd | |
Car15g00270 | Car-Chr15:1466885 | Car18g01061 | Car-Chr18:10824746 | 1.39E-13 | wgd | |
Car15g00270 | Car-Chr15:1466885 | Car04g02663 | Car-Chr4:20741567 | 4.61E-168 | wgd | |
Car15g00270 | Car-Chr15:1466885 | Car04g01696 | Car-Chr4:9737682 | 3.29E-13 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
4785 | PF04770 | ZF-HD_dimer | 1.10E-27 | No_clan | Car | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Car15g00270 | - | - | csv:101213548 | 404.06 |