Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car15g00270 ATGTTTAGAGAGCTTTGTGCTTTTCAAAGAGCCATGGATTTAGCCCCACCTCCCACCACTACTACAACCACGGCTAATAGCACCAAATCTCCCGACCCAGACTCCGACACTCCCACACGCTTCCCGCCGTCGTCTTCGGCCAAGTCGCTGCCTTTCACCAACGGCCTTCTCAAGCGCCACAACCACGCCCCTCAACCCACCCTCCTTGTTTCTTACAAAGAATGTCTCAAAAACCACGCGGCCAGTTTAGGAGCTCACGCGTTGGACGGATGTGGGGAATTTATGCCTTCCCCATCTGCCTCTTCCATTGATCCCACTTCGCTCAACTGCGCCGCATGCGGCTGCCACCGGAATTTCCACCGCCGTGATCCGGAGGATCCGATCTCTACTTTACCCATCAATACAGCAACCACTCATGTCATCGAGTATCAACCCCACCATCGTCATCACCCACCACCGCCCGGGACGCGGAGCCCGAATTCAGCATCTCCGCCGCCGATCTCGTCGTCGTACTACCCATCAGCACCGCACATGTTACTAGCGCTTTCCGCCGGGTTGTCGGCTCATCCACCGGAAATCGGACGCGCGAAAAATTTAAACGCTCGGAAACGATTCAGGACGAAATTCAGCAACGAACAGAAGGAAAAAATGCTCCATTTTGCAGAACAAGTGGGATGGAAAATGCAAAAGCGAGACGAGGATTTGGTCCGAAATTTTTGCAATCAAGTTGGAGTTGAAAGAGGGGTTCTTAAAGTATGGATGCATAACAATAAGAACACCATGGGCAAAAAAACTGATTCCAATGACACCACCCCCACACCCACCACAACCACCACCGCCGCCGCCACTGCCGTCGTCAATATCAACGACAACGACGATGAAGACGAACCAGACGGCGGCTTCCATATGCATATTGGATCAAATGGAAGATCAGAAGAACCCTCGAGAGACACTGAGGCTTCCTCTTTCACAGTAAGGAGTGTTAGATATGGGGAGTGCCAAAAGAACCACGCTGCGAGTGTCGGAGGGTACGCCGTCGATGGGTGTCGAGAATTCATGGCAAGCGGCGATGAAGGTACGACTTCTGCACTGACTTGCGCTGCCTGTGGTTGCCACCGGAGTTTCCATAGAAGGCAAGTTGGAACGGAGGTAGTCAGTGATTGCTCGTCGTCTCCCTCAAACGAAACTTAA 1191 52.64 MFRELCAFQRAMDLAPPPTTTTTTANSTKSPDPDSDTPTRFPPSSSAKSLPFTNGLLKRHNHAPQPTLLVSYKECLKNHAASLGAHALDGCGEFMPSPSASSIDPTSLNCAACGCHRNFHRRDPEDPISTLPINTATTHVIEYQPHHRHHPPPPGTRSPNSASPPPISSSYYPSAPHMLLALSAGLSAHPPEIGRAKNLNARKRFRTKFSNEQKEKMLHFAEQVGWKMQKRDEDLVRNFCNQVGVERGVLKVWMHNNKNTMGKKTDSNDTTPTPTTTTTAAATAVVNINDNDDEDEPDGGFHMHIGSNGRSEEPSRDTEASSFTVRSVRYGECQKNHAASVGGYAVDGCREFMASGDEGTTSALTCAACGCHRSFHRRQVGTEVVSDCSSSPSNET 396
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 1466885 1470846 + Carg02251-RA Car15g00270 162107
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car15g00270 396 MobiDBLite consensus disorder prediction 12 59 - -
Car15g00270 396 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 330 379 IPR006456 -
Car15g00270 396 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 72 123 IPR006456 -
Car15g00270 396 MobiDBLite consensus disorder prediction 260 279 - -
Car15g00270 396 MobiDBLite consensus disorder prediction 144 170 - -
Car15g00270 396 MobiDBLite consensus disorder prediction 15 52 - -
Car15g00270 396 Pfam ZF-HD protein dimerisation region 70 124 IPR006456 -
Car15g00270 396 Pfam ZF-HD protein dimerisation region 328 379 IPR006456 -
Car15g00270 396 MobiDBLite consensus disorder prediction 289 323 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car10g00178 Car-Chr10:851558 Car15g00270 Car-Chr15:1466885 1.36E-15 dispersed
Car15g00270 Car-Chr15:1466885 Car04g01920 Car-Chr4:11409919 9.58E-20 dispersed
Car01g00724 Car-Chr1:4433902 Car15g00270 Car-Chr15:1466885 6.56E-17 wgd
Car11g00862 Car-Chr11:5329178 Car15g00270 Car-Chr15:1466885 6.33E-15 wgd
Car14g00535 Car-Chr14:2939620 Car15g00270 Car-Chr15:1466885 9.50E-14 wgd
Car15g00270 Car-Chr15:1466885 Car18g01061 Car-Chr18:10824746 1.39E-13 wgd
Car15g00270 Car-Chr15:1466885 Car04g02663 Car-Chr4:20741567 4.61E-168 wgd
Car15g00270 Car-Chr15:1466885 Car04g01696 Car-Chr4:9737682 3.29E-13 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
4785 PF04770 ZF-HD_dimer 1.10E-27 No_clan Car TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car15g00270 - - csv:101213548 404.06