Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car15g00270 ATGTTTAGAGAGCTTTGTGCTTTTCAAAGAGCCATGGATTTAGCCCCACCTCCCACCACTACTACAACCACGGCTAATAGCACCAAATCTCCCGACCCAGACTCCGACACTCCCACACGCTTCCCGCCGTCGTCTTCGGCCAAGTCGCTGCCTTTCACCAACGGCCTTCTCAAGCGCCACAACCACGCCCCTCAACCCACCCTCCTTGTTTCTTACAAAGAATGTCTCAAAAACCACGCGGCCAGTTTAGGAGCTCACGCGTTGGACGGATGTGGGGAATTTATGCCTTCCCCATCTGCCTCTTCCATTGATCCCACTTCGCTCAACTGCGCCGCATGCGGCTGCCACCGGAATTTCCACCGCCGTGATCCGGAGGATCCGATCTCTACTTTACCCATCAATACAGCAACCACTCATGTCATCGAGTATCAACCCCACCATCGTCATCACCCACCACCGCCCGGGACGCGGAGCCCGAATTCAGCATCTCCGCCGCCGATCTCGTCGTCGTACTACCCATCAGCACCGCACATGTTACTAGCGCTTTCCGCCGGGTTGTCGGCTCATCCACCGGAAATCGGACGCGCGAAAAATTTAAACGCTCGGAAACGATTCAGGACGAAATTCAGCAACGAACAGAAGGAAAAAATGCTCCATTTTGCAGAACAAGTGGGATGGAAAATGCAAAAGCGAGACGAGGATTTGGTCCGAAATTTTTGCAATCAAGTTGGAGTTGAAAGAGGGGTTCTTAAAGTATGGATGCATAACAATAAGAACACCATGGGCAAAAAAACTGATTCCAATGACACCACCCCCACACCCACCACAACCACCACCGCCGCCGCCACTGCCGTCGTCAATATCAACGACAACGACGATGAAGACGAACCAGACGGCGGCTTCCATATGCATATTGGATCAAATGGAAGATCAGAAGAACCCTCGAGAGACACTGAGGCTTCCTCTTTCACAGTAAGGAGTGTTAGATATGGGGAGTGCCAAAAGAACCACGCTGCGAGTGTCGGAGGGTACGCCGTCGATGGGTGTCGAGAATTCATGGCAAGCGGCGATGAAGGTACGACTTCTGCACTGACTTGCGCTGCCTGTGGTTGCCACCGGAGTTTCCATAGAAGGCAAGTTGGAACGGAGGTAGTCAGTGATTGCTCGTCGTCTCCCTCAAACGAAACTTAA 1191 52.64 MFRELCAFQRAMDLAPPPTTTTTTANSTKSPDPDSDTPTRFPPSSSAKSLPFTNGLLKRHNHAPQPTLLVSYKECLKNHAASLGAHALDGCGEFMPSPSASSIDPTSLNCAACGCHRNFHRRDPEDPISTLPINTATTHVIEYQPHHRHHPPPPGTRSPNSASPPPISSSYYPSAPHMLLALSAGLSAHPPEIGRAKNLNARKRFRTKFSNEQKEKMLHFAEQVGWKMQKRDEDLVRNFCNQVGVERGVLKVWMHNNKNTMGKKTDSNDTTPTPTTTTTAAATAVVNINDNDDEDEPDGGFHMHIGSNGRSEEPSRDTEASSFTVRSVRYGECQKNHAASVGGYAVDGCREFMASGDEGTTSALTCAACGCHRSFHRRQVGTEVVSDCSSSPSNET 396
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 1466885 1470846 + Carg02251-RA Car15g00270 162107

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car15g00270 396 MobiDBLite consensus disorder prediction 12 59 - -
Car15g00270 396 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 330 379 IPR006456 -
Car15g00270 396 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 72 123 IPR006456 -
Car15g00270 396 MobiDBLite consensus disorder prediction 260 279 - -
Car15g00270 396 MobiDBLite consensus disorder prediction 144 170 - -
Car15g00270 396 MobiDBLite consensus disorder prediction 15 52 - -
Car15g00270 396 Pfam ZF-HD protein dimerisation region 70 124 IPR006456 -
Car15g00270 396 Pfam ZF-HD protein dimerisation region 328 379 IPR006456 -
Car15g00270 396 MobiDBLite consensus disorder prediction 289 323 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car15g00270 - - - csv:101213548 404.06
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car10g00178 Car-Chr10:851558 Car15g00270 Car-Chr15:1466885 1.36E-15 dispersed
Car15g00270 Car-Chr15:1466885 Car04g01920 Car-Chr4:11409919 9.58E-20 dispersed
Car01g00724 Car-Chr1:4433902 Car15g00270 Car-Chr15:1466885 6.56E-17 wgd
Car11g00862 Car-Chr11:5329178 Car15g00270 Car-Chr15:1466885 6.33E-15 wgd
Car14g00535 Car-Chr14:2939620 Car15g00270 Car-Chr15:1466885 9.50E-14 wgd
Car15g00270 Car-Chr15:1466885 Car18g01061 Car-Chr18:10824746 1.39E-13 wgd
Car15g00270 Car-Chr15:1466885 Car04g02663 Car-Chr4:20741567 4.61E-168 wgd
Car15g00270 Car-Chr15:1466885 Car04g01696 Car-Chr4:9737682 3.29E-13 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g914 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cmo04g02894 . . . . Car15g00270 Cpe13g00948 . . . . . . . . . . . . . . . . . . .
Vvi14g1541 Blo10g00133 Blo11g00585 . . . . . Bma13g00147 . . . . . . . . Cpe13g00949 . . . . . . . Cla10g01433 Cam10g1180 Cec10g1514 Cco10g1496 Clacu10g1493 Cmu10g2256 Cre10g1638 . . Cone6ag0586 . . Csa05g02448 . . . . Bda07g01353 Bda12g00161 Bpe11g00081 Bpe11g01458 . Bma02g00421 . . Cmo15g00285 . Cma15g00271 . Car15g00270 . . . . . . . . . . . . . . . . . . Chy09g00254 Cme09g00278
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Car05g00476 . 55 239 ZF-HD Transcription Factor Family AT4G24660 54.3 9.6e-50 194.1
Car12g00442 . 89 299 ZF-HD Transcription Factor Family AT4G24660 50.7 3.1e-48 189.1
Car04g00784 . 54 219 ZF-HD Transcription Factor Family AT4G24660 55.0 3.4e-47 185.7
Car04g01920 . 81 280 ZF-HD Transcription Factor Family AT2G02540 55.3 2.4e-51 199.9
Car06g00004 . 69 261 ZF-HD Transcription Factor Family AT2G02540 51.0 2.2e-49 193.4
Car04g01920 . 78 283 ZF-HD Transcription Factor Family AT1G14440 55.2 4.2e-56 215.7
Car06g00004 . 66 261 ZF-HD Transcription Factor Family AT1G14440 54.8 2.5e-53 206.5
Car07g00426 CST 120 322 ZF-HD Transcription Factor Family AT2G18350 56.4 1.4e-52 203.8
Car14g00535 . 11 261 ZF-HD Transcription Factor Family AT5G15210 52.5 7.3e-49 191.4
Car04g02663 . 6 246 ZF-HD Transcription Factor Family AT5G15210 50.2 2.8e-48 189.5
Car15g00270 . 36 258 ZF-HD Transcription Factor Family AT5G15210 54.6 5.8e-46 181.8
Car11g00862 . 13 289 ZF-HD Transcription Factor Family AT5G15210 50.4 1.4e-44 177.2
Car04g02663 . 16 260 ZF-HD Transcription Factor Family AT3G28920 54.5 5.5e-56 215.3
Car14g00535 . 22 249 ZF-HD Transcription Factor Family AT3G28920 59.5 7.1e-56 214.9
Car11g00862 . 23 255 ZF-HD Transcription Factor Family AT3G28920 60.4 4.3e-53 205.7
Car15g00270 . 35 260 ZF-HD Transcription Factor Family AT3G28920 57.6 6.2e-52 201.8
Car04g02663 . 25 252 ZF-HD Transcription Factor Family AT5G39760 53.8 4.3e-51 199.1
Car15g00270 . 37 264 ZF-HD Transcription Factor Family AT5G39760 56.2 4.8e-50 195.7
Car14g00535 . 30 254 ZF-HD Transcription Factor Family AT5G39760 55.8 2.4e-49 193.4
Car11g00862 . 31 283 ZF-HD Transcription Factor Family AT5G39760 61.0 4.5e-48 189.1
Car04g02663 . 56 249 ZF-HD Transcription Factor Family AT1G69600 53.9 7.7e-50 194.5
Car18g01061 . 1 185 ZF-HD Transcription Factor Family AT1G69600 52.3 1.0e-49 194.1
Car15g00270 . 70 261 ZF-HD Transcription Factor Family AT1G69600 51.0 9.5e-48 187.6
Car04g01920 . 81 280 ZF-HD Transcription Factor Family AT2G02540 55.3 2.4e-51 199.9
Car06g00004 . 69 261 ZF-HD Transcription Factor Family AT2G02540 51.0 2.2e-49 193.4
Car05g00476 . 55 239 ZF-HD Transcription Factor Family AT4G24660 54.3 9.6e-50 194.1
Car12g00442 . 89 299 ZF-HD Transcription Factor Family AT4G24660 50.7 3.1e-48 189.1
Car04g00784 . 54 219 ZF-HD Transcription Factor Family AT4G24660 55.0 3.4e-47 185.7
Car04g02663 . 25 252 ZF-HD Transcription Factor Family AT5G39760 53.8 4.3e-51 199.1
Car15g00270 . 37 264 ZF-HD Transcription Factor Family AT5G39760 56.2 4.8e-50 195.7
Car14g00535 . 30 254 ZF-HD Transcription Factor Family AT5G39760 55.8 2.4e-49 193.4
Car11g00862 . 31 283 ZF-HD Transcription Factor Family AT5G39760 61.0 4.5e-48 189.1
Car07g00426 CST 120 322 ZF-HD Transcription Factor Family AT2G18350 56.4 1.4e-52 203.8
Car04g02663 . 56 249 ZF-HD Transcription Factor Family AT1G69600 53.9 7.7e-50 194.5
Car18g01061 . 1 185 ZF-HD Transcription Factor Family AT1G69600 52.3 1.0e-49 194.1
Car15g00270 . 70 261 ZF-HD Transcription Factor Family AT1G69600 51.0 9.5e-48 187.6
Car14g00535 . 11 261 ZF-HD Transcription Factor Family AT5G15210 52.5 7.3e-49 191.4
Car04g02663 . 6 246 ZF-HD Transcription Factor Family AT5G15210 50.2 2.8e-48 189.5
Car15g00270 . 36 258 ZF-HD Transcription Factor Family AT5G15210 54.6 5.8e-46 181.8
Car11g00862 . 13 289 ZF-HD Transcription Factor Family AT5G15210 50.4 1.4e-44 177.2
Car04g01920 . 78 283 ZF-HD Transcription Factor Family AT1G14440 55.2 4.2e-56 215.7
Car06g00004 . 66 261 ZF-HD Transcription Factor Family AT1G14440 54.8 2.5e-53 206.5
Car04g02663 . 16 260 ZF-HD Transcription Factor Family AT3G28920 54.5 5.5e-56 215.3
Car14g00535 . 22 249 ZF-HD Transcription Factor Family AT3G28920 59.5 7.1e-56 214.9
Car11g00862 . 23 255 ZF-HD Transcription Factor Family AT3G28920 60.4 4.3e-53 205.7
Car15g00270 . 35 260 ZF-HD Transcription Factor Family AT3G28920 57.6 6.2e-52 201.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001346 3 2 3 3 3 2 4 2 2 2 2 2 3 2 2 3 2 4 4 2 2 2 3 2 2 3 2 3 2 1 74
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
4785 PF04770 ZF-HD_dimer 1.10E-27 No_clan Car TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car15g00270 Car_Chr15 FPKM 0.0 0.27156 0.104014 0.0 0.675025 0.56863 0.0 0.0 0.0 0.0