Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car15g00277 TGCATTTCCATCCCCATGGCTTCCCCTCACCATTCCCATAGCTTCCTCTTCCAATCCCGTCCCGCCGATCACCACGAATACCTTCCCTCAGCTTCCTTCAACGCCATCCCCTCCTGCCCTCCTCACCTCTACTTCCACGATGGGGTCGTCCCGGTGATGATGAAGAGATCGATGTCGTTTTCAGGCATCGAAAATGGATGCGAGGAAATGAACGGCGACGAGGGGCTATCGGACGATGGATTGGCGTTGGGAGAGAAGAAGAAGCGCCTTAATTTAGAGCAAGTGAAGGCTTTGGAGAAGAGCTTTGAGCTGGGGAATAAGCTTGAGCCTGAGAGAAAGATTCAACTGGCCAAAGCCTTGGGGTTGCAGCCAAGACAGGTTGCTATTTGGTTCCAGAACAGAAGAGCCAGATGGAAGACCAAGCAGCTGGAAAGAGATTATGAGGTCTTGAAGAAACACTTTGAATCTCTTAAGGCTGACAATGATGTCCTCCAAGCTCAAAACACCAAACTCCATGCAGAGTTATTAGCGTTAAAAACCAAGGACTCCGGTGAGGTGGCAGGCGGCGGGGCCACCATGAACCTAAAGAAAGAAAACGAACGGTGTTGGAGCAGCGACAACAGTTGTGACATCAACCTGGACATCTCAAAGACACAAGCAGCAATAAACGGCGGGGAAGGTGGAAGAGCATGTTGTGAACCAGGGATCAAAGACCTATTCCCATCGGCGGCGTTCGGATCGGGTGCCATAACGCAGCTGATTCAACGCGGGTCATCCAGGTCAACGGTTGACCATCCTCAAGTAATTCAAGAAGAAAGCTTCTCTCAAATGTTCAATGGTATTGAAGAACAACAACAAAGTGCAGCAGCAGCAGCAGCAGCTGGGTTTTGGCCATGGGGTTCGGATCAAAATTCCCATTTTAATTAA 927 49.95 CISIPMASPHHSHSFLFQSRPADHHEYLPSASFNAIPSCPPHLYFHDGVVPVMMKRSMSFSGIENGCEEMNGDEGLSDDGLALGEKKKRLNLEQVKALEKSFELGNKLEPERKIQLAKALGLQPRQVAIWFQNRRARWKTKQLERDYEVLKKHFESLKADNDVLQAQNTKLHAELLALKTKDSGEVAGGGATMNLKKENERCWSSDNSCDINLDISKTQAAINGGEGGRACCEPGIKDLFPSAAFGSGAITQLIQRGSSRSTVDHPQVIQEESFSQMFNGIEEQQQSAAAAAAAGFWPWGSDQNSHFN 308
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 1511662 1512822 + Carg02258-RA Car15g00277 162114
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car15g00277 308 Pfam Homeodomain 86 139 IPR001356 GO:0003677
Car15g00277 308 Coils Coil 140 174 - -
Car15g00277 308 ProSitePatterns 'Homeobox' domain signature. 116 139 IPR017970 GO:0000981|GO:0006355
Car15g00277 308 ProSiteProfiles 'Homeobox' domain profile. 85 141 IPR001356 GO:0003677
Car15g00277 308 Pfam Homeobox associated leucine zipper 141 181 IPR003106 GO:0006355|GO:0043565
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Car15g00277 Car18g01074 CCT
Car15g00277 Car18g01074 ECH
Car04g01684 Car15g00277 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car15g00277 Car-Chr15:1511662 Car16g00757 Car-Chr16:4792081 1.59E-38 dispersed
Car13g00767 Car-Chr13:8605745 Car15g00277 Car-Chr15:1511662 4.46E-40 wgd
Car15g00277 Car-Chr15:1511662 Car18g01074 Car-Chr18:10902709 1.32E-78 wgd
Car15g00277 Car-Chr15:1511662 Car18g00118 Car-Chr18:635442 3.61E-35 wgd
Car15g00277 Car-Chr15:1511662 Car04g01684 Car-Chr4:9680977 7.09E-75 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
4787 PF00046 Homeodomain 1.30E-15 CL0123 Car TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car15g00277 K09338 - csv:101212093 523.087