Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car15g00289 ATGAAGATCTCCAAGTTCTTCTTCACATGGCTGTCGCTGGATCGTCTTCTTTTTCTTCTTCTACTTTGTGCTTCTCCATCTTTTTGTGTAGTTCTAGAAGACGACATAAGGTGCCTTCGAGGGGTTAAGAATGCGCTTGTTGATCCACTCGGAAGGCTTAGTTCTTGGGATTTCAAGAACACATCTGTTGGCTATCTCTGCAACAAATTTGTCGGTCTCTCTTGCTGGAACGACCGTGAGAATCGCATTCTGAGTCTCGAGCTTAGAGATATGAAGCTTTCCGGTTCCATTTCTGAGGACTTGCAGTACTGTGTGAGTCTGCAGAAAATGGATCTGTCCGGGAATAGCTTTTCCGGTGCGATCCCGCCGCATATTTGTAAGTGGCTTCCGTATTTGGTTAGCATAGATTTGTCGAACAATCAATTTACCGGCCCTATTCCGGCTGATCTCGCCGGGTGTTCTTATCTGAATTCGTTGATTTTGTCTGATAATGGGCTTTCTGGTACAATACCAGTTGAGCTCACGAGTTTGGGTAGGCTTAACAAGTTTTCCGTTGCGAACAATCATCTCACTGGTACGATTCCCTCCTTTTTTGATAAATTTGGGAAGGAGGATTTTGATGGGAACAGTGACTTATGTGGAGGGCCTGTTGGATCGAGTTGTGGCGGGTTGAGCAAGAAGAATCTTGCGATCATTATAGCTGCTGGTGTGTTTGGTGCCGCGGCTTCTCTGTTGTTAGGTTTTGGGTTGTGGTGGTGGTATCAATCTAGAATGAACATGAAGAAGAGAAGGGGATATCGGGATGGAATTAGTGGGGATTGGGCTGATAGATTGAGAGCCTATAAGCTTGTTCAAGTTTCCTTGTTTCAAAAGCCTCTTGTGAAAGTTAAATTGGCTGATTTGATGGCTGCTACTAACAATTTCAATTCTGAAAATATTATAGTTTCTTCTAGAACTGGGACTACTTATAGAGCTGTTCTTCCAGATGGCTCTGTGCTTGCTATAAAGCGGCTCAATACCTGCAAGCTCGGCGAGAAGCTGTTTCGAATGGAGATGAACCGGTTAGGATTGATAAGGCACCCGAATTTGACACCCCTTTTGGGGTTCTGTGTTGTGGAAGAGGAAAAGCTTTTGGTTTATAAGTACATGTCTAATGGTACTTTGTCCTCTTTGTTACATGGAAATGGTGAGATATTGGATTGGCCAACTAGGTTTAGGATCGGTTTGGGTGCGGCTAGGGGTCTTGCTTGGCTTCATCATGGATGCCAACCTCCATTCATGCATCAAAACATATGTTCTAGTGTAATTCTTGTGGATGAAGACTATGATGCTAGAATCATTGATTTTGGATTAGCAAGGTTGATGTCTTCAGATTCTCACGACAGTAGTTTTGTAAATGGAGATTTAGGGGAGCTTGGTTACATCGCTCCCGAATATCCGAGCACCATGGTTGCTTCTCTGAAGGGGGATGTTTATGGATTTGGGGTTGTGCTTTTGGAGTTGGTCACTGGCCAAAAACCTCTAGAAGTCACTAAAGCAGAGGAAGGCTATAAGGGTAACTTGGTGGATTGGGTTAATCAGCTAAGTATTTCGGGTCGAATTAAGGATGTTATTGATAAAGATCTTTGTGGGAAAGGGAACGATGAGGAAATCTTACAATTTATGAAAATTACAATGAACTGCGTTGTTTCTCGCCCCAAAGATAGGTGGTCTATGTATCAAGTTTATCAGTCAATGAAAACCATGGCTAAAGACTACAGTTTCCCTGACCCAGATGTTGAATTCCCACTTTTATTCGGCAAGGGAGATGAACTCATGTAG 1821 43.22 MKISKFFFTWLSLDRLLFLLLLCASPSFCVVLEDDIRCLRGVKNALVDPLGRLSSWDFKNTSVGYLCNKFVGLSCWNDRENRILSLELRDMKLSGSISEDLQYCVSLQKMDLSGNSFSGAIPPHICKWLPYLVSIDLSNNQFTGPIPADLAGCSYLNSLILSDNGLSGTIPVELTSLGRLNKFSVANNHLTGTIPSFFDKFGKEDFDGNSDLCGGPVGSSCGGLSKKNLAIIIAAGVFGAAASLLLGFGLWWWYQSRMNMKKRRGYRDGISGDWADRLRAYKLVQVSLFQKPLVKVKLADLMAATNNFNSENIIVSSRTGTTYRAVLPDGSVLAIKRLNTCKLGEKLFRMEMNRLGLIRHPNLTPLLGFCVVEEEKLLVYKYMSNGTLSSLLHGNGEILDWPTRFRIGLGAARGLAWLHHGCQPPFMHQNICSSVILVDEDYDARIIDFGLARLMSSDSHDSSFVNGDLGELGYIAPEYPSTMVASLKGDVYGFGVVLLELVTGQKPLEVTKAEEGYKGNLVDWVNQLSISGRIKDVIDKDLCGKGNDEEILQFMKITMNCVVSRPKDRWSMYQVYQSMKTMAKDYSFPDPDVEFPLLFGKGDELM 606
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 1567658 1569478 - Carg02270-RA Car15g00289 162126
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car15g00289 606 Pfam Protein tyrosine and serine/threonine kinase 333 576 IPR001245 GO:0004672|GO:0006468
Car15g00289 606 Pfam Leucine rich repeat N-terminal domain 33 76 IPR013210 -
Car15g00289 606 SUPERFAMILY L domain-like 30 207 - -
Car15g00289 606 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 15 601 - -
Car15g00289 606 Gene3D Phosphorylase Kinase; domain 1 269 382 - -
Car15g00289 606 ProSiteProfiles Protein kinase domain profile. 308 582 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car15g00289 606 PANTHER RECEPTOR-LIKE PROTEIN 55 15 601 - -
Car15g00289 606 Gene3D Transferase(Phosphotransferase) domain 1 383 590 - -
Car15g00289 606 Gene3D Ribonuclease Inhibitor 33 223 IPR032675 -
Car15g00289 606 SUPERFAMILY Protein kinase-like (PK-like) 285 578 IPR011009 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car15g00289 Car-Chr15:1567658 Car18g01139 Car-Chr18:11318917 1.27E-06 dispersed
Car17g01231 Car-Chr17:9377283 Car15g00289 Car-Chr15:1567658 8.26E-168 transposed
Car15g00289 Car-Chr15:1567658 Car04g02638 Car-Chr4:20567192 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
89379 PF07714 PK_Tyr_Ser-Thr 8.60E-29 CL0016 Car PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car15g00289 - - cmos:111445255 1189.87