Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car15g00301 ATGGAATTTCAGGAGGGTTTGATGAAGTTCATGATCCATAGACACGTCAAACACAACTGGGTTTTGGAGAAGAATTCTCCACCGGTTGCAGTTTCAGAGATAACCAGTAGTCCTCGACGGAAATGGCGGATCTTCAATCGGTCTTCTTCTTCCCCATTTCCTTCGAAACCTCCCCAATCGAAGGAAATACCTAAAGAATTGCTCTGTCCCATTTCTGGGTCTTTAATGGCGGATCCTGTAATTGTCTCCTCTGGTCACACTTTCGAAGCCGCCTGTGTTCAGGTTTGTAAAGATTTAGGGTTGAAGCCGACTCTGTTAGACGGTTCCAACCCGGATTTCTCCTCTGTTATCCCAAATCTGGCTCTCAAATCCACTATTCTCAATTGGTGTAAGAATTCCTCTTCTGAATCCCCCAAACCCCTCGATTTCTCCTCCGCTGAAAAGCTCGTTCGTCAATTCATGGCGGCCCACACCAAAAGCGATGAGGAATTGATTCAAGGGATTGCAGAGAATCCTGTGGTTCGATTCAACCACGCCGCCACCGAAGTCACTCGTCGGACCTCTCATTTTCACTCGAGCTCCGATGAATCTGTAGGCGCCGCCGTTCAAACTTTGCCTCTTCCTCTCGCGACAAGGCCGAGTTGTTGTTCTTCGTCTTCTTCCTCTGACATCGAGGTAATCAGTGATCTGAACTTGCCCGAGGAAGAAGAGATCATCGCGAAGCTGAAAAGCTCTCAGGTTATTGAGATTGAAGAGGCTGTGACTGCGCTGAGAAAAATCACTAGAACTCGAGAGGATTCTAGGGTTCATCTCTGTTCTCCTCTGATTCTCTCTTCTCTGCGATCTCTCATCGTCTCGAGGTACACTGGCGTTCAGGTGAATTCAGTTGCAGCGCTTGTAAATCTGTCTTTAGAGAATTTGAACAAGGTTAAGATTGTAAGGTCGGGGATTCTCCCCAATTTGATCGATGTTCTGAAAGGGGGTTCACCGGAGGTTCAAGAACATGCCGCCGGCGCCATTTTCAGCTTAGCTCTCGAAGACGACAACAAAACCGCGATCGGCGTTTTGGGTGCTCTGCCGCCATTGATACGGCTGTTGGTATCCGAATCAGAGCAAACACGGCACGACTCGGCTCTTGCTCTTTATCACTTGTCGCACGTTCAGAGCAACCGTTCGAAGCTTGTGAAACTTGGGTCGGTGCCGGTCTTTCTCGGGATGGTGAAATCCGGCCATATGGCCGGCCGTATTTTACTGATATTGTGTAATTTAGCTGCTTGTTTTGAGGGCCGGGCGGCGTTGTTGGACTCCGGTGCAGTGGAGTGCTTGGTGGGGATGTTGAGGGAGAACGAGCTGGACACTGAGTCGACTCGGGAGAGCTGTGTGGCTGTCCTGTTCGGACTGAGTTACGGCGGTTTGAGGTTTAAGGGTCTGGCAAAAACCGCCGGAGCAATGGAGGTGTTCATGGCGGTAGAGAAAAATGGAAGCGAGAGATCAAAAGAAAAGGTGAAGAGAATCATGGAGTATATGAAAGCCAGAGATGAGGAAGCTGAGGATGTGAATTGGGAGGAGCTACTCGACTCGGGTTGTTTCGGCAGCCGTACTCGGTGTCGAATCGGTGCCGGAATGGACAGATCCACCGCGAACTCGTCGGAGTTCTGA 1659 49.85 MEFQEGLMKFMIHRHVKHNWVLEKNSPPVAVSEITSSPRRKWRIFNRSSSSPFPSKPPQSKEIPKELLCPISGSLMADPVIVSSGHTFEAACVQVCKDLGLKPTLLDGSNPDFSSVIPNLALKSTILNWCKNSSSESPKPLDFSSAEKLVRQFMAAHTKSDEELIQGIAENPVVRFNHAATEVTRRTSHFHSSSDESVGAAVQTLPLPLATRPSCCSSSSSSDIEVISDLNLPEEEEIIAKLKSSQVIEIEEAVTALRKITRTREDSRVHLCSPLILSSLRSLIVSRYTGVQVNSVAALVNLSLENLNKVKIVRSGILPNLIDVLKGGSPEVQEHAAGAIFSLALEDDNKTAIGVLGALPPLIRLLVSESEQTRHDSALALYHLSHVQSNRSKLVKLGSVPVFLGMVKSGHMAGRILLILCNLAACFEGRAALLDSGAVECLVGMLRENELDTESTRESCVAVLFGLSYGGLRFKGLAKTAGAMEVFMAVEKNGSERSKEKVKRIMEYMKARDEEAEDVNWEELLDSGCFGSRTRCRIGAGMDRSTANSSEF 552
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 1625422 1627080 + Carg02282-RA Car15g00301 162138
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car15g00301 552 SUPERFAMILY RING/U-box 57 135 - -
Car15g00301 552 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 62 135 IPR013083 -
Car15g00301 552 Gene3D - 233 508 IPR011989 -
Car15g00301 552 SMART Ubox_2 66 129 IPR003613 GO:0004842|GO:0016567
Car15g00301 552 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 316 353 IPR000225 GO:0005515
Car15g00301 552 CDD RING-Ubox 68 111 - -
Car15g00301 552 SUPERFAMILY ARM repeat 238 497 IPR016024 -
Car15g00301 552 SMART arm_5 426 469 IPR000225 GO:0005515
Car15g00301 552 SMART arm_5 305 345 IPR000225 GO:0005515
Car15g00301 552 SMART arm_5 264 304 IPR000225 GO:0005515
Car15g00301 552 SMART arm_5 346 386 IPR000225 GO:0005515
Car15g00301 552 PANTHER U BOX DOMAIN-CONTAINING 39 541 - -
Car15g00301 552 Pfam Armadillo/beta-catenin-like repeat 308 344 IPR000225 GO:0005515
Car15g00301 552 Pfam Armadillo/beta-catenin-like repeat 347 385 IPR000225 GO:0005515
Car15g00301 552 ProSiteProfiles U-box domain profile. 62 136 IPR003613 GO:0004842|GO:0016567
Car15g00301 552 Pfam U-box domain 63 133 IPR003613 GO:0004842|GO:0016567
Car15g00301 552 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 38 39 541 - -
Car15g00301 552 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 357 399 IPR000225 GO:0005515
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Car04g02629 Car15g00301 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car10g00140 Car-Chr10:669534 Car15g00301 Car-Chr15:1625422 9.24E-170 dispersed
Car11g00114 Car-Chr11:657657 Car15g00301 Car-Chr15:1625422 8.91E-172 dispersed
Car15g00301 Car-Chr15:1625422 Car07g00299 Car-Chr7:1544908 3.33E-36 dispersed
Car13g00744 Car-Chr13:8486765 Car15g00301 Car-Chr15:1625422 8.18E-155 wgd
Car15g00301 Car-Chr15:1625422 Car18g00141 Car-Chr18:771106 7.08E-152 wgd
Car15g00301 Car-Chr15:1625422 Car04g02629 Car-Chr4:20494167 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car15g00301 - - cmax:111489531 1030.01