Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car15g00306 ATGGTGAGGCCTGAGATCCTTGACAAATCTGGCAAGTTCCCAGATAAATCAGATCAGATCAGAATGTTGCAGATGATGGAGGCTGCCATGCCCTTCACTGCCATGATAATGGTGGAGAGCACAGATGTGATCATATCAACACTAATCAAAGTAGCCATGGCCAAAGGGATGAACAACTTGGTCTTCCTTGTCTATTCTAACGCTCTCGCCACCTTCCTTCTCCTTCCCTTTCTCCTCTTTTCTTCCAGAAACAATCTGGGTGCACCTCTATCTTTCTCTATGATCCTTGCCTTCTTTCTCCTTGGGCTTAATGGGAGTGTGGGTGAGTTATTGGCAAACACAGGGATAAACTACAGCTCCCCTGTTCTTTTATCAGCAATGGCAAATCTCATCCCCATTTTCACCGTTTTTCTTGCTGTTATTTTCAGAATGGAGAGGCTTGATTTCAAGAGAAGCAGTGGGAAAGCCAAGTGTTTGGGTACCATTATAGCCGTGTCAGGAGCTTTCTTAATAACTCTGTATAAAGGGCCTGTGTTGATCATGTCCTCCTCTCAGTCGGTGGGACAAGAAGCTGTAGCACTGTCACAGAAGCCAAACTGGGTGTTTGCCTTCGCTGTGTTCATCAAAACAAACCCAACTGTGTGGCAAGTCCGACCCGACATCGAAATGGTCACCATCGTATTCTCCGCCATATTTGGGAGTATGGTTCGTACTGGCGTCCACATATGGTGCTTGCAAAGGAAGGGCCCAGTCTTTGTTGCAATGTTCAAGCCCCTGGGCATGGTCATCGCCGTCGCCTTGGCCGTCAGCTTTCTTCGTGAGTCGCTTTGTCTTGGCAGGTCTGAACGCAAAGAGATGGCGGGAAGTGGAACATACCTGATGGAAGCGGCTCTGCCGTTTCCGGCGATGATCTCCATGGAGTGTATCAACGTCGGACTCAACACTCTTTTCAAATCCGCCACCGCCTCCGGCATGAGCCACCACGTCTTCGTCGTCTATTCTTACTCCCTCGCCGCGCTTCTCCTCCTCCCTTCTCCCTTCATTTCTCGAAGATCCAGGCGTCTACCACCTCTGAGTTTCTCTGTACTTTCCAAGATCGCGCTTCTCGGACTCATCGGTTCTTCTTCGCAGATTATGGGATACACGGGAATCAACTACAGTTCTCCGACGCTTGCTTCCGCTATCAGCAACCTTGTTCCTGCTTTCACTTTCATCCTCGCCGTCATTTTCAGGATGGAGAAAGTGGTATTGAGAAGACATAGCAGTCAAGCCAAAGTGATGGGCACCATAATATCCATATCAGGTGCCTTTGTGGTCACTCTTTACAAGGGCCCTAGGATTATGCTCTCTTCAGCGCCCACGGCTCTTTCACTTCATCATCCGTTACCCTCTTCCCACTCTAATTGGACAAGAATTATGAAGGAATACCCAGACGAGGCAACAGTGATCTTCTTCTACAACTTAACAGTGGCCTTCATAGCTGCCATTGTTGGGGTGGTTTTAGAGACAGATCCAAGCGCTTGGATCTTGAAGCATCATACAGCATTGGCCTCTGTTTTATGCTCTGGACTTTTTGGATCATGCTTGAATAATACAGTTCATACATGGGCACTCCGCTTGAAAGGGCCAGTGTTCGTAGCGATGTTTAAGCCATTGTCGATCGTCGTCGCGATCGTAATGGGTGTTCTATTTCTCGGCGATTCACTATATCTTGGAAGTGTTGTTGGAGCATCCATAATATCCATAGGGTTTTATACTGTGATGTGGGGGAAAGCAAAGGAAGAAAGGGGCGTTGGAGAAGAAAAAGAAGAAGGCCATACCCATAATATTAGTGGTAACAAGGAATCACATGAAGATCAGAGAGTACCTCTTCTTGGAAGCTACAACACACACAGACACAGTGCAGACAATGCGATGTCACAAGGCTTTGCGATCGAGCTCTATTTCGATCCGGCGCTTGAAAATCAAGTTCTCAAGGCTTGGAATGTACTGGCTCGCCGTCAAATTAGTACCCAACTCATTGAAATTGAATCACGCCCTCACATTACCCTCTTCTCCAGCCCTTTTCTTGAACCCACAAAAGTGGAATCCATCGTTAAAAATTTCGCTTCTAAACAGGAACCCTTGCCATTGTCCTTATCGTCAATTGGTAGCCTTCCCAGTGACAACAACGTTCTATTTCTTGGTCCAGCACCTTCGATTTCACTCCTCCAATTTCAGTCCCAATTGTGCGAAGCAATGAGGAAAGAAGGAATTGAAATCGGGGAGGAATATCGTCCCGGCTCGTGGATTCCCCATTGCTCTGTTGCTCAGGAGGTGCCCAGGGCTCGAATGGCTGAGGCATTTTGTGTTCTAAGGGATTTGAAGCTACCAGTTTCCGGGTACGCAATTGATATTGGGTTGGTGGAATTTTCCCCTGTTCGGGAGCTGTTCTCTTTTGTTCTT 2445 47.44 MVRPEILDKSGKFPDKSDQIRMLQMMEAAMPFTAMIMVESTDVIISTLIKVAMAKGMNNLVFLVYSNALATFLLLPFLLFSSRNNLGAPLSFSMILAFFLLGLNGSVGELLANTGINYSSPVLLSAMANLIPIFTVFLAVIFRMERLDFKRSSGKAKCLGTIIAVSGAFLITLYKGPVLIMSSSQSVGQEAVALSQKPNWVFAFAVFIKTNPTVWQVRPDIEMVTIVFSAIFGSMVRTGVHIWCLQRKGPVFVAMFKPLGMVIAVALAVSFLRESLCLGRSERKEMAGSGTYLMEAALPFPAMISMECINVGLNTLFKSATASGMSHHVFVVYSYSLAALLLLPSPFISRRSRRLPPLSFSVLSKIALLGLIGSSSQIMGYTGINYSSPTLASAISNLVPAFTFILAVIFRMEKVVLRRHSSQAKVMGTIISISGAFVVTLYKGPRIMLSSAPTALSLHHPLPSSHSNWTRIMKEYPDEATVIFFYNLTVAFIAAIVGVVLETDPSAWILKHHTALASVLCSGLFGSCLNNTVHTWALRLKGPVFVAMFKPLSIVVAIVMGVLFLGDSLYLGSVVGASIISIGFYTVMWGKAKEERGVGEEKEEGHTHNISGNKESHEDQRVPLLGSYNTHRHSADNAMSQGFAIELYFDPALENQVLKAWNVLARRQISTQLIEIESRPHITLFSSPFLEPTKVESIVKNFASKQEPLPLSLSSIGSLPSDNNVLFLGPAPSISLLQFQSQLCEAMRKEGIEIGEEYRPGSWIPHCSVAQEVPRARMAEAFCVLRDLKLPVSGYAIDIGLVEFSPVRELFSFVL 815
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 1655257 1664653 - Carg02287-RA Car15g00306 162143
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car15g00306 815 Pfam 2'-5' RNA ligase superfamily 679 793 - -
Car15g00306 815 MobiDBLite consensus disorder prediction 596 616 - -
Car15g00306 815 Pfam EamA-like transporter family 482 588 IPR000620 GO:0016020|GO:0016021
Car15g00306 815 Pfam EamA-like transporter family 311 440 IPR000620 GO:0016020|GO:0016021
Car15g00306 815 Pfam EamA-like transporter family 47 172 IPR000620 GO:0016020|GO:0016021
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Car04g02626 Car15g00306 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car15g00306 Car-Chr15:1655257 Car07g00952 Car-Chr7:5393100 9.08E-22 dispersed
Car04g02626 Car-Chr4:20481036 Car15g00306 Car-Chr15:1655257 3.25E-28 transposed
Car04g02627 Car-Chr4:20483817 Car15g00306 Car-Chr15:1655257 1.35E-118 transposed
Car16g00595 Car-Chr16:3777757 Car15g00306 Car-Chr15:1655257 5.89E-55 transposed
Car15g00306 Car-Chr15:1655257 Car04g02625 Car-Chr4:20479454 1.31E-10 wgd
Car15g00306 Car-Chr15:1655257 Car04g01631 Car-Chr4:9417379 5.30E-13 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car15g00306 - - csv:101208880 525.013