Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car15g00313 ATGATGTCGGACGGATTGATCTTCAACCGATCTCCAGGTCACGCCAACATGCTGTTTTTTGGGAGTGGCGATTCCATTCTTCGAGGATCATGTTTCACGAAGGGGATGGAGGAAAATTCGAAGCGACCCTTTTTCAGCTCTCCGGATGACCTGTTCGATGATGACTACTACGATGACCAGCCGCCTGAGAAGAAGCGCCGGCTAACTCAAGAGCAGGTGCATCTGCTGGAGATTAGCTTTGAGGCAGAAAACAAACTGGAGCCAGAGCGCAAGACTGAGCTAGCAAAGAAGCTGGGTCTGCAGCCAAGGCAAGTGGCTGTCTGGTTTCAAAACCGCCGAGCTCGATGGAAGACAAAACAGCTTGAAAGGGACTATGATCTTCTCAAATCTTCATATGATTCCTTTTGTTCTAGCTACGACTTTATGGCCAAGGAGAATGAAAGACTCAAAGCCGAGGTAGCTTCTTTAACTGAGAAACTTCAAGCTAAAGAAGTGGTTGAATCATCGTTTCAAGCTAAGAAATCCGAGCCAATTTTGGAAGATCAACTCCTTGTTTCTGTTGTGCAACACAATATGAAGATTGATGACCATCATAGTTGCAGGAGCAATGGTAGCGCTGTGCTGGATGAGGATGGTCCTCAACTCTTGGACAGTGGGAATTCATACCTCCTGAGCAATGACTATGATGGCTGTGTGTTGCCAGTTTTTGGAGTGAACTCAGAGGAGGAGGATGTGAGTGACGACGGTCAGGGCTACTTCTCGGATGTTTATACAGCAGCCGATCAGCAGACTCACGAGGCAGAGCCATTGACCTGGTGGGACTGGTCGTTGTAA 834 47.84 MMSDGLIFNRSPGHANMLFFGSGDSILRGSCFTKGMEENSKRPFFSSPDDLFDDDYYDDQPPEKKRRLTQEQVHLLEISFEAENKLEPERKTELAKKLGLQPRQVAVWFQNRRARWKTKQLERDYDLLKSSYDSFCSSYDFMAKENERLKAEVASLTEKLQAKEVVESSFQAKKSEPILEDQLLVSVVQHNMKIDDHHSCRSNGSAVLDEDGPQLLDSGNSYLLSNDYDGCVLPVFGVNSEEEDVSDDGQGYFSDVYTAADQQTHEAEPLTWWDWSL 277
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 1688606 1690865 - Carg02294-RA Car15g00313 162150

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car15g00313 277 ProSitePatterns 'Homeobox' domain signature. 94 117 IPR017970 GO:0000981|GO:0006355
Car15g00313 277 ProSiteProfiles 'Homeobox' domain profile. 59 119 IPR001356 GO:0003677
Car15g00313 277 Coils Coil 139 166 - -
Car15g00313 277 MobiDBLite consensus disorder prediction 42 62 - -
Car15g00313 277 Pfam Homeodomain 64 117 IPR001356 GO:0003677
Car15g00313 277 Pfam Homeobox associated leucine zipper 119 161 IPR003106 GO:0006355|GO:0043565
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car15g00313 K09338 HD-ZIP; homeobox-leucine zipper protein - csv:101210106 465.692
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Car14g00587 Car15g00313 CCT
Car11g01382 Car15g00313 CCT
Car04g02619 Car15g00313 CST
Car04g01668 Car15g00313 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car13g00767 Car-Chr13:8605745 Car15g00313 Car-Chr15:1688606 8.12E-42 dispersed
Car15g00313 Car-Chr15:1688606 Car18g00118 Car-Chr18:635442 9.66E-38 dispersed
Car11g01382 Car-Chr11:11285730 Car15g00313 Car-Chr15:1688606 1.27E-76 wgd
Car14g00587 Car-Chr14:3198557 Car15g00313 Car-Chr15:1688606 5.11E-71 wgd
Car15g00313 Car-Chr15:1688606 Car04g02619 Car-Chr4:20454193 3.56E-172 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g846 . Blo16g01135 . Bda11g01236 Bpe13g00467 . . . . . . . . . Sed04g0677 . . Bhi07g01613 Tan04g1126 Cmetu10g1215 Lac13g0276 Hepe10g1711 . . Cla05g02477 Cam05g2661 Cec05g2695 Cco05g2730 Clacu05g2663 Cmu05g2517 Cre05g2632 . . Cone6ag0614 Cone9ag0617 Lsi04g00464 Csa05g02414 Chy10g00972 Cme10g00452 . . . Bda11g01236 . . Bma01g00080 Bma06g00658 . . . . . Car04g01668 Car15g00313 Cpe13g00941 . . . . . . . . . . . . . . . . . Chy09g00265 .
Vvi14g1377 Blo10g00465 Blo11g00670 . . . . . Bma13g00523 Cmo14g00654 Cmo11g01698 Cma11g01423 Cma14g00644 Car11g01382 Car14g00587 . Cpe03g00557 Cpe13g00908 Bhi06g00499 . . . . . . Cla10g01364 Cam10g1244 Cec10g1449 Cco10g1420 Clacu10g1424 Cmu10g2192 Cre10g1576 . . Cone2ag0135 Cone16ag0919 Lsi02g01555 Csa05g02906 Chy04g01468 Cme04g01900 . . . . Bpe09g00488 Bpe11g01552 . . . Cmo04g02845 Cmo15g00340 Cma04g02715 Cma15g00329 Car04g02619 Car15g00313 . Cpe01g02355 Bhi11g01661 . . . Hepe02g1854 . . Cla09g01845 Cam09g1937 Cec09g2002 Cco09g2096 . . Cre01g0567 . Csa03g03923 Chy09g00328 Cme09g00366
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004960 1 3 1 2 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 4 1 1 41
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
4789 PF00046 Homeodomain 4.60E-17 CL0123 Car TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car15g00313 Car_Chr15 FPKM 0.0 0.0 30.393869 29.676277 26.507257 28.535566 0.0 41.534615 38.862881 40.779335