Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car15g00318 ATGGATCATTCAGCTGAGACATCTAGGCACAAGTGCGCTGCTTGCTTCAGGCAATTCAACAAGATTGAGCATTTGGTTGATCATATGAGGACCTCTTTCCACTCACCTCATGAACCCACTTGTGCTGTTTGCAAGAAACACTGTCGTTCTCTTGATTCTCTTAGAGAACATCTCATTGAGTTAGACACCGGACGGTGTGCCAGCGAGGAAGCTGGCACCCAGAGAGGGTGGATTGGCCGCTGCCGAAGCAAGAATGCAAAAACGTCTTCGACATGCGAGGATGCAAGTTTTGCTTGGCCATCCTTGACAGTTCATACTCACAAAGGCTCCACCAAGAAAGATGCCAATTCTCGTGGGCTTCTTGCTCGTTTGGCCAACTTGGGAATTCGCGATGGTTCAACTGCCATCGACGGTGGAAGAACTCGAGGCTCCGGTCCCGTGGCGTTAGCTTGCAAATATGTAGGTGGCGGTGATGGGTCGCTGGATGTCTGTGCCAAGGTCTGCCTTATTGATGAGAGTGAAAATGTCATCTTCTATAGCTATGTCAAGCCCATAATTCCCGTTACAAATTATAGGTATGAAATGACGGGCATTCGTCCCGAACACCTTCGAGATGCAATGCCATTGAAGCAAGTTCAAAAGAAAATTCAAGATATCCTCTACAATGGAGGTGAGAAAGCTAGGGTTCTTGTGGGTCACTGTGTGGAAGACGATCTCAAACGTCTACAAATCGGATATCCATCCATCATGATAAGGGACATAGCAAATTATCCGCCATTGATGAAGACAAGCAAGCTATGCAATTCACTCAAGTATCTAGCTCAAGTATTTGAGATTCAAAATGGAGTACAAGATCCTTATGAAGAATGTGTTGGTGGCATGAGATTGTACAAGAGAATGAGATCACAAGTTCATAGGATAGAGCATCATCCAATGGCTTCTGACCCACAAAACAAAAACAACTTTGCAGCTTGGAGGGAGAATGAGCTTGAGAGGATGAGCCCAGAACAGATGTTGGAGATTTCTAGGTCTGATTATTACTGTTGGTGCATGGATTTGAGGATTTGA 1068 45.41 MDHSAETSRHKCAACFRQFNKIEHLVDHMRTSFHSPHEPTCAVCKKHCRSLDSLREHLIELDTGRCASEEAGTQRGWIGRCRSKNAKTSSTCEDASFAWPSLTVHTHKGSTKKDANSRGLLARLANLGIRDGSTAIDGGRTRGSGPVALACKYVGGGDGSLDVCAKVCLIDESENVIFYSYVKPIIPVTNYRYEMTGIRPEHLRDAMPLKQVQKKIQDILYNGGEKARVLVGHCVEDDLKRLQIGYPSIMIRDIANYPPLMKTSKLCNSLKYLAQVFEIQNGVQDPYEECVGGMRLYKRMRSQVHRIEHHPMASDPQNKNNFAAWRENELERMSPEQMLEISRSDYYCWCMDLRI 355
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 1702262 1704597 - Carg02299-RA Car15g00318 162155
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car15g00318 355 Pfam Exonuclease 171 280 IPR013520 -
Car15g00318 355 ProSitePatterns Zinc finger C2H2 type domain signature. 12 34 IPR013087 -
Car15g00318 355 ProSiteProfiles Zinc finger C2H2 type domain profile. 10 39 IPR013087 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Car04g02616 Car15g00318 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car02g01558 Car-Chr2:10032963 Car15g00318 Car-Chr15:1702262 1.41E-53 dispersed
Car15g00318 Car-Chr15:1702262 Car03g00862 Car-Chr3:6932034 8.83E-06 dispersed
Car02g01557 Car-Chr2:10031137 Car15g00318 Car-Chr15:1702262 1.12E-09 transposed
Car09g00750 Car-Chr9:4453142 Car15g00318 Car-Chr15:1702262 9.75E-23 transposed
Car15g00318 Car-Chr15:1702262 Car04g02616 Car-Chr4:20444894 2.53E-120 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car15g00318 - - csv:101218614 539.65