Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Car15g00373 ATGGTTTTCTCTTCAGTTCCAGTGTTTCTTGATCCACCAAATTGGCCTTCTCAGCAACCAAATCAGCTCCAACCAAGTAGCTGTGAGACTAATAATGGTCAACATCTTCCACCTCCGCCACCCCCGGCTGGGGGTGCTGGTGGGCCTGGCTCAATTCGACCTGGCTCGATGACGGATCGAGCTAGGTTAGCCAAGATACCGCAACCGGAAGCTGGACTAAAATGCCCTAGATGTGAATCAACCAACACCAAGTTTTGTTACTTCAACAACTATAGTCTCACTCAGCCTCGCCACTTTTGCAAGACCTGTCGACGATACTGGACGAGAGGCGGGGCGATGAGGAGTGTGCCGGTTGGAGGTGGGTGTCGGCGGTCGAGTAAGAGAAGTAAAGGAGGTAGCAATAGGTCAAAATCTCCGGGAGGGTCAAGTACTTCAACAAGCACAGTGTCATCAAATAGCTGCACAACGGATATACTTAGCCACCAATTGGCTCATCCACCACCTCCGCCGCCGCCACCGCCGCCAACCCATTTCCCATTTTTGGGTCAAAATTTGCAGCATCTTAGTGATTTTGGGAACCTGGGTTTGAACTTTGAAGCTCTTCAAATCCCATCAATGGCATCATCAGGGGGAGAATCCTCAATTTTATCAAGTGGAATTACGGATCATCATCAATGGAAAATACCCTTTTTTGCAAATTTACATCAACAAAATGGGTTGTACTCAAATTTCATGGCTGAAGAACATCATCAACATCAAGCACAAGCAGCTGATTTCTCAAATTACCAGCGTTTATCAAAGCCATTAATGGACACTGGATTTAGTTCTTCCACACCTCATCATCAATTGGGGAATATCAATAACAATACCATGAAAATCATGGAAGAAACTCAAGGAATTCACAATTTGTCAAGAAATTTCCTCGGAATTCAACCAAACGATCCGTTCTGGAATTCCACCACGTCTACCACAACAACAACCACAACAACAACACCTGGGAATACCGCATGGAGTACCGATCAAATTTCGGATCTTTTATAA 1041 45.53 MVFSSVPVFLDPPNWPSQQPNQLQPSSCETNNGQHLPPPPPPAGGAGGPGSIRPGSMTDRARLAKIPQPEAGLKCPRCESTNTKFCYFNNYSLTQPRHFCKTCRRYWTRGGAMRSVPVGGGCRRSSKRSKGGSNRSKSPGGSSTSTSTVSSNSCTTDILSHQLAHPPPPPPPPPPTHFPFLGQNLQHLSDFGNLGLNFEALQIPSMASSGGESSILSSGITDHHQWKIPFFANLHQQNGLYSNFMAEEHHQHQAQAADFSNYQRLSKPLMDTGFSSSTPHHQLGNINNNTMKIMEETQGIHNLSRNFLGIQPNDPFWNSTTSTTTTTTTTTPGNTAWSTDQISDLL 346
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
15 1950676 1952248 - Carg02354-RA Car15g00373 162210
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Car15g00373 346 MobiDBLite consensus disorder prediction 10 57 - -
Car15g00373 346 MobiDBLite consensus disorder prediction 132 160 - -
Car15g00373 346 Pfam Dof domain, zinc finger 73 127 IPR003851 GO:0003677|GO:0006355
Car15g00373 346 ProSiteProfiles Zinc finger Dof-type profile. 73 127 IPR003851 GO:0003677|GO:0006355
Car15g00373 346 MobiDBLite consensus disorder prediction 318 346 - -
Car15g00373 346 MobiDBLite consensus disorder prediction 114 182 - -
Car15g00373 346 ProSitePatterns Zinc finger Dof-type signature. 75 111 IPR003851 GO:0003677|GO:0006355
Car15g00373 346 MobiDBLite consensus disorder prediction 163 179 - -
Car15g00373 346 MobiDBLite consensus disorder prediction 11 33 - -
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car01g00540 Car-Chr1:3203824 Car15g00373 Car-Chr15:1950676 9.27E-53 dispersed
Car14g00128 Car-Chr14:617199 Car15g00373 Car-Chr15:1950676 6.66E-49 wgd
Car15g00373 Car-Chr15:1950676 Car02g00587 Car-Chr2:4460372 4.14E-49 wgd
Car15g00373 Car-Chr15:1950676 Car20g00359 Car-Chr20:2020738 1.42E-44 wgd
Car15g00373 Car-Chr15:1950676 Car04g00201 Car-Chr4:1109912 5.22E-51 wgd
Car15g00373 Car-Chr15:1950676 Car04g01092 Car-Chr4:6300012 8.25E-56 wgd
Car15g00373 Car-Chr15:1950676 Car04g02541 Car-Chr4:20112631 8.55E-150 wgd
Car15g00373 Car-Chr15:1950676 Car06g00263 Car-Chr6:1493595 1.43E-48 wgd
Car15g00373 Car-Chr15:1950676 Car07g00965 Car-Chr7:5466298 1.03E-32 wgd
       

Transcription factors information


Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
4794 PF02701 zf-Dof 1.20E-30 No_clan Car TF
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car15g00373 - - cmo:103498163 436.417