Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Car15g00373 | ATGGTTTTCTCTTCAGTTCCAGTGTTTCTTGATCCACCAAATTGGCCTTCTCAGCAACCAAATCAGCTCCAACCAAGTAGCTGTGAGACTAATAATGGTCAACATCTTCCACCTCCGCCACCCCCGGCTGGGGGTGCTGGTGGGCCTGGCTCAATTCGACCTGGCTCGATGACGGATCGAGCTAGGTTAGCCAAGATACCGCAACCGGAAGCTGGACTAAAATGCCCTAGATGTGAATCAACCAACACCAAGTTTTGTTACTTCAACAACTATAGTCTCACTCAGCCTCGCCACTTTTGCAAGACCTGTCGACGATACTGGACGAGAGGCGGGGCGATGAGGAGTGTGCCGGTTGGAGGTGGGTGTCGGCGGTCGAGTAAGAGAAGTAAAGGAGGTAGCAATAGGTCAAAATCTCCGGGAGGGTCAAGTACTTCAACAAGCACAGTGTCATCAAATAGCTGCACAACGGATATACTTAGCCACCAATTGGCTCATCCACCACCTCCGCCGCCGCCACCGCCGCCAACCCATTTCCCATTTTTGGGTCAAAATTTGCAGCATCTTAGTGATTTTGGGAACCTGGGTTTGAACTTTGAAGCTCTTCAAATCCCATCAATGGCATCATCAGGGGGAGAATCCTCAATTTTATCAAGTGGAATTACGGATCATCATCAATGGAAAATACCCTTTTTTGCAAATTTACATCAACAAAATGGGTTGTACTCAAATTTCATGGCTGAAGAACATCATCAACATCAAGCACAAGCAGCTGATTTCTCAAATTACCAGCGTTTATCAAAGCCATTAATGGACACTGGATTTAGTTCTTCCACACCTCATCATCAATTGGGGAATATCAATAACAATACCATGAAAATCATGGAAGAAACTCAAGGAATTCACAATTTGTCAAGAAATTTCCTCGGAATTCAACCAAACGATCCGTTCTGGAATTCCACCACGTCTACCACAACAACAACCACAACAACAACACCTGGGAATACCGCATGGAGTACCGATCAAATTTCGGATCTTTTATAA | 1041 | 45.53 | MVFSSVPVFLDPPNWPSQQPNQLQPSSCETNNGQHLPPPPPPAGGAGGPGSIRPGSMTDRARLAKIPQPEAGLKCPRCESTNTKFCYFNNYSLTQPRHFCKTCRRYWTRGGAMRSVPVGGGCRRSSKRSKGGSNRSKSPGGSSTSTSTVSSNSCTTDILSHQLAHPPPPPPPPPPTHFPFLGQNLQHLSDFGNLGLNFEALQIPSMASSGGESSILSSGITDHHQWKIPFFANLHQQNGLYSNFMAEEHHQHQAQAADFSNYQRLSKPLMDTGFSSSTPHHQLGNINNNTMKIMEETQGIHNLSRNFLGIQPNDPFWNSTTSTTTTTTTTTPGNTAWSTDQISDLL | 346 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 15 | 1950676 | 1952248 | - | Carg02354-RA | Car15g00373 | 162210 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Car15g00373 | 346 | MobiDBLite | consensus disorder prediction | 10 | 57 | - | - | |
| Car15g00373 | 346 | MobiDBLite | consensus disorder prediction | 132 | 160 | - | - | |
| Car15g00373 | 346 | Pfam | Dof domain, zinc finger | 73 | 127 | IPR003851 | GO:0003677|GO:0006355 | |
| Car15g00373 | 346 | ProSiteProfiles | Zinc finger Dof-type profile. | 73 | 127 | IPR003851 | GO:0003677|GO:0006355 | |
| Car15g00373 | 346 | MobiDBLite | consensus disorder prediction | 318 | 346 | - | - | |
| Car15g00373 | 346 | MobiDBLite | consensus disorder prediction | 114 | 182 | - | - | |
| Car15g00373 | 346 | ProSitePatterns | Zinc finger Dof-type signature. | 75 | 111 | IPR003851 | GO:0003677|GO:0006355 | |
| Car15g00373 | 346 | MobiDBLite | consensus disorder prediction | 163 | 179 | - | - | |
| Car15g00373 | 346 | MobiDBLite | consensus disorder prediction | 11 | 33 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Car01g00540 | Car-Chr1:3203824 | Car15g00373 | Car-Chr15:1950676 | 9.27E-53 | dispersed | |
| Car14g00128 | Car-Chr14:617199 | Car15g00373 | Car-Chr15:1950676 | 6.66E-49 | wgd | |
| Car15g00373 | Car-Chr15:1950676 | Car02g00587 | Car-Chr2:4460372 | 4.14E-49 | wgd | |
| Car15g00373 | Car-Chr15:1950676 | Car20g00359 | Car-Chr20:2020738 | 1.42E-44 | wgd | |
| Car15g00373 | Car-Chr15:1950676 | Car04g00201 | Car-Chr4:1109912 | 5.22E-51 | wgd | |
| Car15g00373 | Car-Chr15:1950676 | Car04g01092 | Car-Chr4:6300012 | 8.25E-56 | wgd | |
| Car15g00373 | Car-Chr15:1950676 | Car04g02541 | Car-Chr4:20112631 | 8.55E-150 | wgd | |
| Car15g00373 | Car-Chr15:1950676 | Car06g00263 | Car-Chr6:1493595 | 1.43E-48 | wgd | |
| Car15g00373 | Car-Chr15:1950676 | Car07g00965 | Car-Chr7:5466298 | 1.03E-32 | wgd |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 4794 | PF02701 | zf-Dof | 1.20E-30 | No_clan | Car | TF |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Car15g00373 | - | - | cmo:103498163 | 436.417 |