Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car15g00373 ATGGTTTTCTCTTCAGTTCCAGTGTTTCTTGATCCACCAAATTGGCCTTCTCAGCAACCAAATCAGCTCCAACCAAGTAGCTGTGAGACTAATAATGGTCAACATCTTCCACCTCCGCCACCCCCGGCTGGGGGTGCTGGTGGGCCTGGCTCAATTCGACCTGGCTCGATGACGGATCGAGCTAGGTTAGCCAAGATACCGCAACCGGAAGCTGGACTAAAATGCCCTAGATGTGAATCAACCAACACCAAGTTTTGTTACTTCAACAACTATAGTCTCACTCAGCCTCGCCACTTTTGCAAGACCTGTCGACGATACTGGACGAGAGGCGGGGCGATGAGGAGTGTGCCGGTTGGAGGTGGGTGTCGGCGGTCGAGTAAGAGAAGTAAAGGAGGTAGCAATAGGTCAAAATCTCCGGGAGGGTCAAGTACTTCAACAAGCACAGTGTCATCAAATAGCTGCACAACGGATATACTTAGCCACCAATTGGCTCATCCACCACCTCCGCCGCCGCCACCGCCGCCAACCCATTTCCCATTTTTGGGTCAAAATTTGCAGCATCTTAGTGATTTTGGGAACCTGGGTTTGAACTTTGAAGCTCTTCAAATCCCATCAATGGCATCATCAGGGGGAGAATCCTCAATTTTATCAAGTGGAATTACGGATCATCATCAATGGAAAATACCCTTTTTTGCAAATTTACATCAACAAAATGGGTTGTACTCAAATTTCATGGCTGAAGAACATCATCAACATCAAGCACAAGCAGCTGATTTCTCAAATTACCAGCGTTTATCAAAGCCATTAATGGACACTGGATTTAGTTCTTCCACACCTCATCATCAATTGGGGAATATCAATAACAATACCATGAAAATCATGGAAGAAACTCAAGGAATTCACAATTTGTCAAGAAATTTCCTCGGAATTCAACCAAACGATCCGTTCTGGAATTCCACCACGTCTACCACAACAACAACCACAACAACAACACCTGGGAATACCGCATGGAGTACCGATCAAATTTCGGATCTTTTATAA 1041 45.53 MVFSSVPVFLDPPNWPSQQPNQLQPSSCETNNGQHLPPPPPPAGGAGGPGSIRPGSMTDRARLAKIPQPEAGLKCPRCESTNTKFCYFNNYSLTQPRHFCKTCRRYWTRGGAMRSVPVGGGCRRSSKRSKGGSNRSKSPGGSSTSTSTVSSNSCTTDILSHQLAHPPPPPPPPPPTHFPFLGQNLQHLSDFGNLGLNFEALQIPSMASSGGESSILSSGITDHHQWKIPFFANLHQQNGLYSNFMAEEHHQHQAQAADFSNYQRLSKPLMDTGFSSSTPHHQLGNINNNTMKIMEETQGIHNLSRNFLGIQPNDPFWNSTTSTTTTTTTTTPGNTAWSTDQISDLL 346
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 1950676 1952248 - Carg02354-RA Car15g00373 162210

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car15g00373 346 MobiDBLite consensus disorder prediction 10 57 - -
Car15g00373 346 MobiDBLite consensus disorder prediction 132 160 - -
Car15g00373 346 Pfam Dof domain, zinc finger 73 127 IPR003851 GO:0003677|GO:0006355
Car15g00373 346 ProSiteProfiles Zinc finger Dof-type profile. 73 127 IPR003851 GO:0003677|GO:0006355
Car15g00373 346 MobiDBLite consensus disorder prediction 318 346 - -
Car15g00373 346 MobiDBLite consensus disorder prediction 114 182 - -
Car15g00373 346 ProSitePatterns Zinc finger Dof-type signature. 75 111 IPR003851 GO:0003677|GO:0006355
Car15g00373 346 MobiDBLite consensus disorder prediction 163 179 - -
Car15g00373 346 MobiDBLite consensus disorder prediction 11 33 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car15g00373 - - - cmo:103498163 436.417
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car01g00540 Car-Chr1:3203824 Car15g00373 Car-Chr15:1950676 9.27E-53 dispersed
Car14g00128 Car-Chr14:617199 Car15g00373 Car-Chr15:1950676 6.66E-49 wgd
Car15g00373 Car-Chr15:1950676 Car02g00587 Car-Chr2:4460372 4.14E-49 wgd
Car15g00373 Car-Chr15:1950676 Car20g00359 Car-Chr20:2020738 1.42E-44 wgd
Car15g00373 Car-Chr15:1950676 Car04g00201 Car-Chr4:1109912 5.22E-51 wgd
Car15g00373 Car-Chr15:1950676 Car04g01092 Car-Chr4:6300012 8.25E-56 wgd
Car15g00373 Car-Chr15:1950676 Car04g02541 Car-Chr4:20112631 8.55E-150 wgd
Car15g00373 Car-Chr15:1950676 Car06g00263 Car-Chr6:1493595 1.43E-48 wgd
Car15g00373 Car-Chr15:1950676 Car07g00965 Car-Chr7:5466298 1.03E-32 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Car13g00488 CCT,CST 16 169 C2C2-Dof Transcription Factor Family AT1G29160 57.2 5.4e-45 177.9
Car18g00388 CCT,CST 11 155 C2C2-Dof Transcription Factor Family AT1G29160 52.9 2.8e-41 165.6
Car03g01185 CCT,CST 11 161 C2C2-Dof Transcription Factor Family AT1G29160 52.4 4.0e-40 161.8
Car07g00157 CCT,CST 11 162 C2C2-Dof Transcription Factor Family AT1G29160 53.8 4.0e-40 161.8
Car15g01176 CST 1 96 C2C2-Dof Transcription Factor Family AT1G64620 72.5 2.3e-39 160.2
Car13g00488 CCT,CST 16 169 C2C2-Dof Transcription Factor Family AT2G34140 56.2 5.3e-45 177.9
Car18g00388 CCT,CST 11 155 C2C2-Dof Transcription Factor Family AT2G34140 52.4 1.2e-41 166.8
Car03g01185 CCT,CST 11 161 C2C2-Dof Transcription Factor Family AT2G34140 51.8 4.8e-38 154.8
Car07g00157 CCT,CST 11 162 C2C2-Dof Transcription Factor Family AT2G34140 50.9 2.4e-37 152.5
Car04g02541 . 1 142 C2C2-Dof Transcription Factor Family AT2G37590 67.4 9.9e-40 161.4
Car14g00128 CCT,CST,ECH 1 132 C2C2-Dof Transcription Factor Family AT2G37590 64.5 1.9e-38 157.1
Car06g00263 CCT,CST,ECH 1 128 C2C2-Dof Transcription Factor Family AT2G37590 64.1 2.7e-37 153.3
Car01g00540 CCT,CST,ECH 55 129 C2C2-Dof Transcription Factor Family AT2G37590 89.3 4.6e-37 152.5
Car15g00373 . 1 125 C2C2-Dof Transcription Factor Family AT2G37590 58.9 7.8e-37 151.8
Car13g00103 CCT,CST,ECH 30 104 C2C2-Dof Transcription Factor Family AT2G37590 89.3 1.7e-36 150.6
Car15g01176 CST 1 94 C2C2-Dof Transcription Factor Family AT4G24060 74.0 6.0e-40 162.2
Car06g00758 . 87 222 C2C2-Dof Transcription Factor Family AT5G39660 56.9 3.4e-38 156.8
Car01g00540 CCT,CST,ECH 1 129 C2C2-Dof Transcription Factor Family AT5G02460 57.6 9.1e-40 161.8
Car13g00103 CCT,CST,ECH 23 104 C2C2-Dof Transcription Factor Family AT5G02460 86.6 3.8e-38 156.4
Car15g00373 . 1 125 C2C2-Dof Transcription Factor Family AT5G02460 57.8 1.5e-37 154.5
Car03g00379 CCT,ECH 43 116 C2C2-Dof Transcription Factor Family AT5G02460 86.5 2.1e-36 150.6
Car03g00379 CCT,ECH 19 138 C2C2-Dof Transcription Factor Family AT3G55370 62.8 5.1e-37 152.5
Car11g00205 CCT,CST 26 315 C2C2-Dof Transcription Factor Family AT5G60850 51.3 1.4e-48 190.7
Car10g00264 CCT,CST 26 320 C2C2-Dof Transcription Factor Family AT5G60850 54.0 9.2e-48 188.0
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013092 0 0 0 0 0 1 2 1 1 1 1 1 2 1 1 2 1 0 2 1 1 1 1 1 1 1 1 2 1 0 28
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
4794 PF02701 zf-Dof 1.20E-30 No_clan Car TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car15g00373 Car_Chr15 FPKM 0.0 0.0 0.050295 0.097685 0.398596 0.49694 0.225472 0.071757 0.0 0.093359