Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car15g00405 ATGCAGTCTCCGCCGCCGCCGCCGCCGCTGATGGTGGTTCTCAGCCCTTGCGCCGCCTGTAAGATCCTCCGCCGGAGATGCGTCGATAAGTGTGTTTTAGCGCCTTATTTTCCTCCGACTGAGCCACTCAAGTTCGCCGCCGTGCATAGAATATTTGGAGCCGGCAACGTAATCAAGTTTCTGCAGGAACTTCCAGAGAACCAGAGAGCGGATGCTACAAGCAGTTTAGTATATGAAGCCAACGCTAGGATTCGAGACCCCGTCTATGGTTGCACTGGTTCAATTTTTCAGCTGCAAAATCAAGTGAGCGAGCTCCAAGCGCAACTAGCCGTGGCTAAGGCTGAGGTTCACAAGATGCAAGCTCAACATGCAAATTTGTTAGCTCTAATGTGCACGGAAACAAGTCAAGTTCGAGTTGAAGGTCAACAAGTCCCGGTCTTGCGCCAAGACCACTTTCCATTTACTGATTTAAACCCTATTCCACATAATTACAAATCTTCCAATATTTGTTGGGACTCCTCATGGACTTCATCATAG 537 49.16 MQSPPPPPPLMVVLSPCAACKILRRRCVDKCVLAPYFPPTEPLKFAAVHRIFGAGNVIKFLQELPENQRADATSSLVYEANARIRDPVYGCTGSIFQLQNQVSELQAQLAVAKAEVHKMQAQHANLLALMCTETSQVRVEGQQVPVLRQDHFPFTDLNPIPHNYKSSNICWDSSWTSS 178
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 2108674 2109533 - Carg02388-RA Car15g00405 162242
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car15g00405 178 Coils Coil 95 122 - -
Car15g00405 178 Pfam Lateral organ boundaries (LOB) domain 16 113 IPR004883 -
Car15g00405 178 ProSiteProfiles LOB domain profile. 15 116 IPR004883 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car13g00164 Car-Chr13:1477601 Car15g00405 Car-Chr15:2108674 5.37E-60 dispersed
Car15g00405 Car-Chr15:2108674 Car02g00017 Car-Chr2:178245 6.45E-50 dispersed
Car15g00405 Car-Chr15:2108674 Car20g00407 Car-Chr20:2301707 1.78E-61 wgd
Car15g00405 Car-Chr15:2108674 Car04g00252 Car-Chr4:1433576 1.20E-68 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
4795 PF03195 LOB 1.70E-41 No_clan Car TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car15g00405 - - nnu:104588651 221.476