Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Car15g00406 | ATGGGGAAGAAGGGGGGATGGTTTTCTGCTGTGAAGAAGGCATTTGCTACTGAATCTAAGGAAAAGAAAGAGCAGAGACCCAACAAATCCAAGAAGAGATGGTTTGGGAAGCCAAAGAAATTGGAGACAGCTCCATTGGATGTGTCTGTTCTTCCTATTGAAGAGGTGAAGCTAGTTGATGCAGAGAATGAACAGAGCAAACATGCTTATTCTGTTGCCATTGCCACTGCAGTCGCCGCCGAGGCCGCTGTCGCAGCCGCACAGGCTGCGGCGGAGGTCGTTCGGCTCACTACCATCACTAGGTACTCCGGGAAATCAAAGGAAGAGATAGCAGCCATCAAGATCCAGACTGCATTCCGTGGCTATATGGCAAGGAGGGCGCTGCGGGCATTAAGAGGGTTGGTGAGGCTGAAGTCATTGATCCAAGGCCAGTCTGTTAAGAGACAAGCAACCACCACATTAAGATGCATGCAGACGCTTGCTCGTGTGCAGTCACAGGTGCGTGGAAGAAGAATTAGAATGTCAGAGGAGAATCAGGCTCTCCAGAGGCAGCTCCAACAAAAACATGAAAGAGAGCTTCACAGATTAACTGCTTCTGCAAACAATGAATGGAATGACAGTACCAAATCAAAGCAGCAAATTGAAGCCAGACAAGTTTACAGGCAAGAAGCAGCAACAAGAAGAGAAAGGGCATTGGCGTATGCTTACTCTCATCAGAATTCAGGCAAGAATTCTTCCAAATCTGCAAACCCTACATTTATGGATCCGAACAATCCCCATTGGGGATGGAGTTGGTTGGAGCGATGGATGGCCGCTCGTCCATGGGAGGCTAAGATCACCGCCGATTGTCACGATCGCGGCTCTGTCAAGAGCGCGATCAGCCATGCGACCTCGATCGGAGACATTTCCAAATCTTACTCCCGTCGCGATCTCAATCTCGACATCAAGCCATTTCCAAGGACTCCGACGAGCCAGAAAACAAGCCGAGCTCCAAGTCGCCAATCGCCGGCAACTCCTACGAAGGCGCATTCGTCGCTATCTGCAGGGAGAAAATTGAAGCCGGATAGTCCAAGAGGATTCGGCTGGAGTGGAGACGCCGATTCCCGAAGCGCATTGAGCGTCAAATCGGAGCGGTACCGGCGACACAGCATCGCCGGATCATCCGTGAGAGATGATGAAAGCTTCACGAGTTCGCCGTCAGTTCCAAGCTACATGGCGTCCACAGAAGCAGCCAGGGCAAGGTCCCGGTTGTCGAGTCCAATGGGAACGGAGAATACGGCAGCGACTCCAGATAAGGCACCAGCCAGTGGCGGCGTAAAGAAACGGCTCTCGTTCCCCGCCTCGCCGGCGAACTCGAGGAGGCACTCTGGTCCGCCGAAAGTAGACACTAACCCGATCAAGAATGTTGCAGACAGAGATTTCACCGGCGAGAGCCGATAG | 1440 | 52.22 | MGKKGGWFSAVKKAFATESKEKKEQRPNKSKKRWFGKPKKLETAPLDVSVLPIEEVKLVDAENEQSKHAYSVAIATAVAAEAAVAAAQAAAEVVRLTTITRYSGKSKEEIAAIKIQTAFRGYMARRALRALRGLVRLKSLIQGQSVKRQATTTLRCMQTLARVQSQVRGRRIRMSEENQALQRQLQQKHERELHRLTASANNEWNDSTKSKQQIEARQVYRQEAATRRERALAYAYSHQNSGKNSSKSANPTFMDPNNPHWGWSWLERWMAARPWEAKITADCHDRGSVKSAISHATSIGDISKSYSRRDLNLDIKPFPRTPTSQKTSRAPSRQSPATPTKAHSSLSAGRKLKPDSPRGFGWSGDADSRSALSVKSERYRRHSIAGSSVRDDESFTSSPSVPSYMASTEAARARSRLSSPMGTENTAATPDKAPASGGVKKRLSFPASPANSRRHSGPPKVDTNPIKNVADRDFTGESR | 479 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 15 | 2112389 | 2116439 | - | Carg02389-RA | Car15g00406 | 162243 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Car15g00406 | 479 | MobiDBLite | consensus disorder prediction | 313 | 479 | - | - | |
| Car15g00406 | 479 | Pfam | IQ calmodulin-binding motif | 111 | 129 | IPR000048 | GO:0005515 | |
| Car15g00406 | 479 | MobiDBLite | consensus disorder prediction | 17 | 36 | - | - | |
| Car15g00406 | 479 | MobiDBLite | consensus disorder prediction | 318 | 345 | - | - | |
| Car15g00406 | 479 | MobiDBLite | consensus disorder prediction | 389 | 405 | - | - | |
| Car15g00406 | 479 | ProSiteProfiles | IQ motif profile. | 108 | 136 | IPR000048 | GO:0005515 | |
| Car15g00406 | 479 | MobiDBLite | consensus disorder prediction | 412 | 430 | - | - | |
| Car15g00406 | 479 | Coils | Coil | 171 | 191 | - | - | |
| Car15g00406 | 479 | MobiDBLite | consensus disorder prediction | 371 | 388 | - | - |
Event-related genes
| Select | Gene_1 | Gene_2 | Event_name |
|---|---|---|---|
| Car04g01432 | Car15g00406 | CCT | |
| Car15g00406 | Car18g00808 | CCT | |
| Car04g01432 | Car15g00406 | ECH | |
| Car15g00406 | Car18g00808 | ECH | |
| Car04g02506 | Car15g00406 | CST |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Car03g01126 | Car-Chr3:9095471 | Car15g00406 | Car-Chr15:2112389 | 1.45E-126 | dispersed | |
| Car04g02128 | Car-Chr4:17341693 | Car15g00406 | Car-Chr15:2112389 | 9.17E-38 | dispersed | |
| Car07g00918 | Car-Chr7:5109008 | Car15g00406 | Car-Chr15:2112389 | 2.63E-124 | dispersed | |
| Car10g00782 | Car-Chr10:4247644 | Car15g00406 | Car-Chr15:2112389 | 3.92E-35 | dispersed | |
| Car11g00811 | Car-Chr11:4806138 | Car15g00406 | Car-Chr15:2112389 | 2.10E-50 | dispersed | |
| Car14g01261 | Car-Chr14:10857619 | Car15g00406 | Car-Chr15:2112389 | 1.03E-24 | dispersed | |
| Car15g00406 | Car-Chr15:2112389 | Car18g00808 | Car-Chr18:9145038 | 1.33E-102 | dispersed | |
| Car04g02507 | Car-Chr4:19888638 | Car15g00406 | Car-Chr15:2112389 | 5.45E-33 | transposed | |
| Car06g00798 | Car-Chr6:6155668 | Car15g00406 | Car-Chr15:2112389 | 3.46E-42 | transposed | |
| Car07g00168 | Car-Chr7:990818 | Car15g00406 | Car-Chr15:2112389 | 2.87E-39 | transposed | |
| Car17g00469 | Car-Chr17:3354633 | Car15g00406 | Car-Chr15:2112389 | 1.67E-40 | transposed | |
| Car15g00406 | Car-Chr15:2112389 | Car04g01432 | Car-Chr4:8297663 | 1.06E-95 | wgd | |
| Car15g00406 | Car-Chr15:2112389 | Car04g02506 | Car-Chr4:19885272 | 0 | wgd | |
| Car15g00406 | Car-Chr15:2112389 | Car06g00308 | Car-Chr6:1710739 | 1.69E-61 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Car15g00406 | - | - | csv:101209731 | 781.941 |