Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car15g00406 ATGGGGAAGAAGGGGGGATGGTTTTCTGCTGTGAAGAAGGCATTTGCTACTGAATCTAAGGAAAAGAAAGAGCAGAGACCCAACAAATCCAAGAAGAGATGGTTTGGGAAGCCAAAGAAATTGGAGACAGCTCCATTGGATGTGTCTGTTCTTCCTATTGAAGAGGTGAAGCTAGTTGATGCAGAGAATGAACAGAGCAAACATGCTTATTCTGTTGCCATTGCCACTGCAGTCGCCGCCGAGGCCGCTGTCGCAGCCGCACAGGCTGCGGCGGAGGTCGTTCGGCTCACTACCATCACTAGGTACTCCGGGAAATCAAAGGAAGAGATAGCAGCCATCAAGATCCAGACTGCATTCCGTGGCTATATGGCAAGGAGGGCGCTGCGGGCATTAAGAGGGTTGGTGAGGCTGAAGTCATTGATCCAAGGCCAGTCTGTTAAGAGACAAGCAACCACCACATTAAGATGCATGCAGACGCTTGCTCGTGTGCAGTCACAGGTGCGTGGAAGAAGAATTAGAATGTCAGAGGAGAATCAGGCTCTCCAGAGGCAGCTCCAACAAAAACATGAAAGAGAGCTTCACAGATTAACTGCTTCTGCAAACAATGAATGGAATGACAGTACCAAATCAAAGCAGCAAATTGAAGCCAGACAAGTTTACAGGCAAGAAGCAGCAACAAGAAGAGAAAGGGCATTGGCGTATGCTTACTCTCATCAGAATTCAGGCAAGAATTCTTCCAAATCTGCAAACCCTACATTTATGGATCCGAACAATCCCCATTGGGGATGGAGTTGGTTGGAGCGATGGATGGCCGCTCGTCCATGGGAGGCTAAGATCACCGCCGATTGTCACGATCGCGGCTCTGTCAAGAGCGCGATCAGCCATGCGACCTCGATCGGAGACATTTCCAAATCTTACTCCCGTCGCGATCTCAATCTCGACATCAAGCCATTTCCAAGGACTCCGACGAGCCAGAAAACAAGCCGAGCTCCAAGTCGCCAATCGCCGGCAACTCCTACGAAGGCGCATTCGTCGCTATCTGCAGGGAGAAAATTGAAGCCGGATAGTCCAAGAGGATTCGGCTGGAGTGGAGACGCCGATTCCCGAAGCGCATTGAGCGTCAAATCGGAGCGGTACCGGCGACACAGCATCGCCGGATCATCCGTGAGAGATGATGAAAGCTTCACGAGTTCGCCGTCAGTTCCAAGCTACATGGCGTCCACAGAAGCAGCCAGGGCAAGGTCCCGGTTGTCGAGTCCAATGGGAACGGAGAATACGGCAGCGACTCCAGATAAGGCACCAGCCAGTGGCGGCGTAAAGAAACGGCTCTCGTTCCCCGCCTCGCCGGCGAACTCGAGGAGGCACTCTGGTCCGCCGAAAGTAGACACTAACCCGATCAAGAATGTTGCAGACAGAGATTTCACCGGCGAGAGCCGATAG 1440 52.22 MGKKGGWFSAVKKAFATESKEKKEQRPNKSKKRWFGKPKKLETAPLDVSVLPIEEVKLVDAENEQSKHAYSVAIATAVAAEAAVAAAQAAAEVVRLTTITRYSGKSKEEIAAIKIQTAFRGYMARRALRALRGLVRLKSLIQGQSVKRQATTTLRCMQTLARVQSQVRGRRIRMSEENQALQRQLQQKHERELHRLTASANNEWNDSTKSKQQIEARQVYRQEAATRRERALAYAYSHQNSGKNSSKSANPTFMDPNNPHWGWSWLERWMAARPWEAKITADCHDRGSVKSAISHATSIGDISKSYSRRDLNLDIKPFPRTPTSQKTSRAPSRQSPATPTKAHSSLSAGRKLKPDSPRGFGWSGDADSRSALSVKSERYRRHSIAGSSVRDDESFTSSPSVPSYMASTEAARARSRLSSPMGTENTAATPDKAPASGGVKKRLSFPASPANSRRHSGPPKVDTNPIKNVADRDFTGESR 479
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 2112389 2116439 - Carg02389-RA Car15g00406 162243

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car15g00406 479 MobiDBLite consensus disorder prediction 313 479 - -
Car15g00406 479 Pfam IQ calmodulin-binding motif 111 129 IPR000048 GO:0005515
Car15g00406 479 MobiDBLite consensus disorder prediction 17 36 - -
Car15g00406 479 MobiDBLite consensus disorder prediction 318 345 - -
Car15g00406 479 MobiDBLite consensus disorder prediction 389 405 - -
Car15g00406 479 ProSiteProfiles IQ motif profile. 108 136 IPR000048 GO:0005515
Car15g00406 479 MobiDBLite consensus disorder prediction 412 430 - -
Car15g00406 479 Coils Coil 171 191 - -
Car15g00406 479 MobiDBLite consensus disorder prediction 371 388 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car15g00406 - - - csv:101209731 781.941
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Car04g01432 Car15g00406 CCT
Car15g00406 Car18g00808 CCT
Car04g01432 Car15g00406 ECH
Car15g00406 Car18g00808 ECH
Car04g02506 Car15g00406 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car03g01126 Car-Chr3:9095471 Car15g00406 Car-Chr15:2112389 1.45E-126 dispersed
Car04g02128 Car-Chr4:17341693 Car15g00406 Car-Chr15:2112389 9.17E-38 dispersed
Car07g00918 Car-Chr7:5109008 Car15g00406 Car-Chr15:2112389 2.63E-124 dispersed
Car10g00782 Car-Chr10:4247644 Car15g00406 Car-Chr15:2112389 3.92E-35 dispersed
Car11g00811 Car-Chr11:4806138 Car15g00406 Car-Chr15:2112389 2.10E-50 dispersed
Car14g01261 Car-Chr14:10857619 Car15g00406 Car-Chr15:2112389 1.03E-24 dispersed
Car15g00406 Car-Chr15:2112389 Car18g00808 Car-Chr18:9145038 1.33E-102 dispersed
Car04g02507 Car-Chr4:19888638 Car15g00406 Car-Chr15:2112389 5.45E-33 transposed
Car06g00798 Car-Chr6:6155668 Car15g00406 Car-Chr15:2112389 3.46E-42 transposed
Car07g00168 Car-Chr7:990818 Car15g00406 Car-Chr15:2112389 2.87E-39 transposed
Car17g00469 Car-Chr17:3354633 Car15g00406 Car-Chr15:2112389 1.67E-40 transposed
Car15g00406 Car-Chr15:2112389 Car04g01432 Car-Chr4:8297663 1.06E-95 wgd
Car15g00406 Car-Chr15:2112389 Car04g02506 Car-Chr4:19885272 0 wgd
Car15g00406 Car-Chr15:2112389 Car06g00308 Car-Chr6:1710739 1.69E-61 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi13g474 . Blo13g00915 . Bda15g00176 . . . Bma08g01144 . Cmo04g01429 Cma04g01355 Cma18g00883 Car04g01432 Car18g00808 . Cpe13g00819 Cpe09g00427 . . . . . . . Cla05g02129 Cam05g2284 Cec05g2305 . . . Cre05g2265 . Cone5ag0328 . Cone18ag0502 Lsi02g01698 . Chy10g01339 Cme10g00057 Blo13g00730 . . . Bpe04g01873 . . Bma08g00947 . Cmo04g02721 Cmo15g00445 Cma04g02600 Cma15g00434 Car04g02506 Car15g00406 Cpe01g01224 Cpe01g02257 . . . . . . . . . . . . . . Lsi04g00055 Csa05g01776 . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Car06g00308 CCT,ECH 9 187 IQD Protein Family AT3G09710 57.5 3.0e-50 196.8
Car04g01432 CCT,CST,ECH 84 236 IQD Protein Family AT3G09710 53.9 3.7e-40 163.3
Car04g02506 CCT,CST,ECH 1 282 IQD Protein Family AT5G03040 52.6 2.5e-65 246.9
Car06g00308 CCT,ECH 3 187 IQD Protein Family AT5G03040 63.8 8.6e-58 221.9
Car15g00406 CCT,CST,ECH 1 467 IQD Protein Family AT3G52290 53.0 5.5e-99 358.6
Car04g02506 CCT,CST,ECH 1 285 IQD Protein Family AT3G52290 66.7 6.5e-84 308.5
Car06g00308 CCT,ECH 8 187 IQD Protein Family AT3G52290 55.6 2.9e-47 186.8
Car03g01126 CCT,CST,ECH 95 284 IQD Protein Family AT2G26410 50.3 5.6e-37 152.9
Car11g00811 . 1 412 IQD Protein Family AT3G22190 57.2 1.2e-95 347.4
Car10g00782 . 23 333 IQD Protein Family AT3G22190 50.1 8.1e-63 238.4
Car01g01342 . 1 434 IQD Protein Family AT2G26180 59.7 4.0e-115 412.1
Car09g00291 . 1 438 IQD Protein Family AT2G26180 58.4 8.4e-113 404.4
Car16g00380 . 40 223 IQD Protein Family AT2G33990 52.9 2.1e-48 189.9
Car16g00380 . 43 216 IQD Protein Family AT3G15050 61.6 1.6e-53 206.8
Car06g00798 . 1 500 IQD Protein Family AT4G00820 55.7 3.5e-127 452.6
Car06g00798 . 1 500 IQD Protein Family AT1G01110 52.4 1.8e-123 440.3
Car08g00629 CCT,CST,ECH 1 397 IQD Protein Family AT3G16490 52.6 9.4e-74 274.6
Car10g00607 CST 1 376 IQD Protein Family AT3G16490 52.8 2.7e-68 256.5
Car11g00535 CST 1 382 IQD Protein Family AT3G16490 51.4 4.5e-68 255.8
Car17g00704 CCT,CST,ECH 1 389 IQD Protein Family AT3G16490 50.5 2.3e-67 253.4
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005280 2 2 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 1 1 6 1 0 40
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car15g00406 Car_Chr15 FPKM 21.256199 22.585133 29.30526 29.356329 22.141356 23.47052 25.088268 57.441391 62.814465 63.184269