Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Car15g00504 | ATGGGGATTCAGACTATGGGGTCTCAGGCTGGAGGTGATCCGAATGGCAAACAATCACAGTTCCAGCCGTTGGTTCGTCAAAGCTCGCTCTATAATCTCACGTTGGATGAGGTCCAAAATCAGTTGGGAGATCTAGGAAAGCCGTTAGTCAGTATGAATCTCGACGAGCTTCTTAAGAATGTGTGGACTGCTGAGGCGAACCAAACGGTTGGTAAGGAGAATGAGGATAATACTGTCTTGGATAATCAAACGTCCCTACAACGTCAGGCTAGCCTTTCGTTGAATGGTGCTCTGAGTAAAAAGACTGTTGATGAGGTGTGGAGAGATATTCAACAAAGCAAAAATAGTGAGGAGAAGAAGTCTCGTGAACAGCAACCGACGTTGGGAGAGATGACGTTGGAGGATTTTCTAGTGAAAGCAGGGGTGGTTGCTGAAACGTCGTCGAATAAAAAAGGAGCGGGTTCTGTTGTTGAAATTGATGCAAATATCACGCCGCAGTTTCAACAAACGCAGTGGATGCAGTACCCGCAACCTCCGTATCAGTCTCAACAAGCAGCAATGATGGGGGTTTACATGTCGGGCCAGCCTATTCCCCAGCCGCTGCACGTGGGGGCTGGTGCTGTGATGGATGTTCCATATGTAGACAACCAGATGGCGTTACAAACTCCTTTAATGGGAACTTTATCGGACACACCGACATCTGGGAGAAAAAGAGGAGCGCCTGAAGACATGATTGAGAAAACTGTCGAGCGTAGACAGAAAAGGATGATAAAGAATCGGGAATCTGCCGCTCGTTCACGAGCAAGGAAGCAGGCATATACCAATGAACTGGAGAATAAAGTTTCACGTTTGGAAGAGGAGAACGAAAGGCTCCGGAAACGGAAGAACAAGACCAGGAAGAGTGGGTCTCCTTGCCTTTCCTCATTTATCAGCAGTAACTCCAGGCCTTGCGTCGGAGCTGGAAAAGATGCTACCTTTGGCACCCTCACCGGAGCCGAAGTATCAGCTTCGAAGAACATCGTCAGCGCCGTTCTAACTTGGACATCGACTCTGTCTTCCTCCTCCTCACACTCGTCGTAA | 1080 | 48.43 | MGIQTMGSQAGGDPNGKQSQFQPLVRQSSLYNLTLDEVQNQLGDLGKPLVSMNLDELLKNVWTAEANQTVGKENEDNTVLDNQTSLQRQASLSLNGALSKKTVDEVWRDIQQSKNSEEKKSREQQPTLGEMTLEDFLVKAGVVAETSSNKKGAGSVVEIDANITPQFQQTQWMQYPQPPYQSQQAAMMGVYMSGQPIPQPLHVGAGAVMDVPYVDNQMALQTPLMGTLSDTPTSGRKRGAPEDMIEKTVERRQKRMIKNRESAARSRARKQAYTNELENKVSRLEEENERLRKRKNKTRKSGSPCLSSFISSNSRPCVGAGKDATFGTLTGAEVSASKNIVSAVLTWTSTLSSSSSHSS | 359 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 15 | 2749471 | 2753883 | + | Carg01653-RA | Car15g00504 | 162341 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Car15g00504 | 359 | Pfam | bZIP transcription factor | 251 | 300 | IPR004827 | GO:0003700|GO:0006355 | |
| Car15g00504 | 359 | ProSiteProfiles | Basic-leucine zipper (bZIP) domain profile. | 249 | 301 | IPR004827 | GO:0003700|GO:0006355 | |
| Car15g00504 | 359 | MobiDBLite | consensus disorder prediction | 257 | 309 | - | - | |
| Car15g00504 | 359 | MobiDBLite | consensus disorder prediction | 257 | 293 | - | - | |
| Car15g00504 | 359 | MobiDBLite | consensus disorder prediction | 1 | 23 | - | - | |
| Car15g00504 | 359 | ProSitePatterns | Basic-leucine zipper (bZIP) domain signature. | 254 | 269 | IPR004827 | GO:0003700|GO:0006355 | |
| Car15g00504 | 359 | Coils | Coil | 267 | 301 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Car05g00153 | Car-Chr5:769103 | Car15g00504 | Car-Chr15:2749471 | 2.78E-41 | dispersed | |
| Car11g01097 | Car-Chr11:8627343 | Car15g00504 | Car-Chr15:2749471 | 8.24E-45 | dispersed | |
| Car11g01234 | Car-Chr11:10096143 | Car15g00504 | Car-Chr15:2749471 | 1.78E-29 | dispersed | |
| Car12g00510 | Car-Chr12:3385224 | Car15g00504 | Car-Chr15:2749471 | 9.34E-32 | dispersed | |
| Car15g00504 | Car-Chr15:2749471 | Car20g00146 | Car-Chr20:799484 | 1.25E-33 | dispersed | |
| Car04g02953 | Car-Chr4:22168537 | Car15g00504 | Car-Chr15:2749471 | 2.87E-71 | transposed | |
| Car09g00586 | Car-Chr9:3309179 | Car15g00504 | Car-Chr15:2749471 | 1.29E-13 | transposed | |
| Car16g01181 | Car-Chr16:10020970 | Car15g00504 | Car-Chr15:2749471 | 7.68E-19 | transposed | |
| Car15g00504 | Car-Chr15:2749471 | Car04g02403 | Car-Chr4:19192285 | 0 | wgd |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 4804 | PF00170 | bZIP_1 | 1.90E-13 | CL0018 | Car | TF |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Car15g00504 | K14432 | - | csv:101213915 | 506.138 |