Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car15g00518 ATGGACCTCCATAGCCATTTGTTTCGTTACTTTATTGCTTTGGTTCTTTGTCTTTCAGTATCTTTGTCGGTAGCCGCCATATCTCTAGGTTCGTCTTTGAGAGCTTCGAATTCCAATCAGACGTGGGATTCGGCTAATGGAGATTTCTCTTTGAGGTTTCATCCGGCGGATTCCTCCGGTTCTTCTTTTATCGCCGGCATAGTCTTTACTGGTGGCGTTCCTACTATCTGGTCCGCTGGCGGCGGTGCTACGGTGGATGCTTCTGGTGCTCTTCACTTTCAATCCGACGGTAACCTTCGTCTCGTCGATGGCTCTGGTGCTGTCGTTTGGGAATCTAACACCACCGGCCGTGGAGTCTCCTCCGCTGTGCTCGAGGACTCCGGCAACCTCATCCTTCGAAATAGTAGTTCCCAGGCCGTCTGGTCTTCGTTCGATCACCCGACGGACACGATTGTTCCATCGCAGAATTTCACAGTGGGCATGGTCCTGCGATCTGGTCAGTATTCTTTTAACCTACTTAACATTGGGAATATAACTCTGACTTGGAATGGAGATGGACCGAATGGTGATGTAGTTTATTGGAATCATGGATTAAATACGTCGATCAATGGCTCCTTGAATTCTCCTAGTTTACGATTAGATCCTATTGGAATGTTGGCTGTTTATGATACCAGAATACCTGCTGGATCATTTGTAGCTTATAGCAACGATTACGCAGATAATGGTGGCGGTGCTACTTTTAGGTTTCTGAGGTTGAAAGATGATGGAAATTTAGAGATTCATAGCGTTGTTAGAGGCAGTGGGTCTGAATCCGTGGGATGGAAAGCTGTTCCAGATAAGTGTCAAATATTTGGGTTCTGTGGGGAACTTAGTATTTGTAGCTATAATGATACAAGTCCGATCTGTAGTTGCCCATCCGCAAACTTTGAGCCAGTTGATCACCACGATTGGAAGAAAGGGTGTAAGGCGAAATTGGATATCAGAAACTGTTCCAGCGGCATCACGATGTTGGAGTTGAAGAACACAAAGCTATTAACATTTCCAAAGAACTTAGAGGTCTACTCCATGCAGATATCAGGGTGTCAATCAAATTGTCGACAGAGTTCTGCTTGTGATGCTTCCACTGCGCCATCAGATGGTAATGGATTTTGTTATTACATACCGTCAGGCTTCATTAGGGGATATCAGAGTGCTGCGTTGCCAAGCAGTTCATTTCTCAAGGTCTGTGGAGAAGTTCTTGAAAACCAATTGGAATCTTCTGATGTTTCAAGGCCGGGTGGTATGAATGTGAAGGCTTGGGTCTTGGCGGTTGTGGTTTTGGTCACCCTTTTTGCCATGATTGTTTGTGAGGCTGGTTTATGGTGGTGGTGTTGCAGGAACAGCCCCAAGTTTGGAGGGATGTCCAGCCAATACACCCTTCTTGAGTATGCTTCTGGTGCTCCTGTTCAATTCTCATTTAAAGAACTCCATCGTGTGACCAATGGATTCAAGGAAAAGCTTGGAGCCGGTGGATTTGGAGCTGTTTATAAAGGTGTTCTTACTAATAAGACGGTCGTCGCAGTGAAGCAACTCGAGGGAATCGAGCAGGGAGAGAAGCAATTTAGGATGGAGGTAGCAACTATAAGTAGCACACACCATTTGAATCTGGTGAGATTGGTTGGTTTTTGCTCGGAAGGACGGCATAGGCTGTTAGTATATGAGCTCATGAAAAATGGCTCTCTTGATAGTTTGCTTTTCAAGGGAGAAGAAGGACAATCTGGGAAGTTCCTCAGCTGGGAAGATCGATTCAAAATTGCTGCTGGCACTGCCAAGGGGATCACATACCTTCACGAGGAGTGCCGTGATTGCATCATTCATTGTGATATAAAGCCAGAGAACATTCTCTTAGATGAGAATTTAAACGCTAAAGTCTCAGATTTTGGCCTGGCAAAGCTCATTAACATGAAAGACCACCGATATCGAACCTTGACTAGCGTAAGAGGAACACGAGGATATTTGGCGCCCGAATGGCTCGCAAATCTGCCACTGACTTCAAAATCTGATGTTTTCAGCTTCGGTATGGTTCTTTTAGAGATCGTAAGCGGACGAAGGAACTTCAACGTTACTGCCGAAACAAATCACAAGAGGTTCTCTTTGTGGGCTTATGAAGAGTTTGAAAAAGGGAATCTCATAGAAATTGTTGACAAAAGGCTGGTGGATCAAGTGATTGATATGGAGCAAGTGAGCAGGGTGGTTCAGGTGAGCTTTTGGTGCATCCAGGAGCAACCATCTCAGAGGCCAACAATGGGAAAAGTGGTGCAGATGATCGAAGGCGTCATCGACATCGAGAGGCCTCCTGCACCAAAGGTAACATCCATGGTGTCTGCAAGTGGAACCAGCACATATATCAGCAGCAATATAAGCAATTTCTCGACCGCTGAAACACCCGCTACACCGGCCTCATTTTCGTCGTCGCTTGCTGCAACAGACTTGACTCCTGGTGGCAGCATTTGTGAGAAAACAAGTTCATCTCTTCTGCACTCA 2523 45.82 MDLHSHLFRYFIALVLCLSVSLSVAAISLGSSLRASNSNQTWDSANGDFSLRFHPADSSGSSFIAGIVFTGGVPTIWSAGGGATVDASGALHFQSDGNLRLVDGSGAVVWESNTTGRGVSSAVLEDSGNLILRNSSSQAVWSSFDHPTDTIVPSQNFTVGMVLRSGQYSFNLLNIGNITLTWNGDGPNGDVVYWNHGLNTSINGSLNSPSLRLDPIGMLAVYDTRIPAGSFVAYSNDYADNGGGATFRFLRLKDDGNLEIHSVVRGSGSESVGWKAVPDKCQIFGFCGELSICSYNDTSPICSCPSANFEPVDHHDWKKGCKAKLDIRNCSSGITMLELKNTKLLTFPKNLEVYSMQISGCQSNCRQSSACDASTAPSDGNGFCYYIPSGFIRGYQSAALPSSSFLKVCGEVLENQLESSDVSRPGGMNVKAWVLAVVVLVTLFAMIVCEAGLWWWCCRNSPKFGGMSSQYTLLEYASGAPVQFSFKELHRVTNGFKEKLGAGGFGAVYKGVLTNKTVVAVKQLEGIEQGEKQFRMEVATISSTHHLNLVRLVGFCSEGRHRLLVYELMKNGSLDSLLFKGEEGQSGKFLSWEDRFKIAAGTAKGITYLHEECRDCIIHCDIKPENILLDENLNAKVSDFGLAKLINMKDHRYRTLTSVRGTRGYLAPEWLANLPLTSKSDVFSFGMVLLEIVSGRRNFNVTAETNHKRFSLWAYEEFEKGNLIEIVDKRLVDQVIDMEQVSRVVQVSFWCIQEQPSQRPTMGKVVQMIEGVIDIERPPAPKVTSMVSASGTSTYISSNISNFSTAETPATPASFSSSLAATDLTPGGSICEKTSSSLLHS 841
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 2806904 2809426 + Carg01639-RA Car15g00518 162355

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car15g00518 841 ProSitePatterns Protein kinases ATP-binding region signature. 500 522 IPR017441 GO:0005524
Car15g00518 841 ProSiteProfiles Protein kinase domain profile. 494 773 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car15g00518 841 ProSiteProfiles Bulb-type lectin domain profile. 24 145 IPR001480 -
Car15g00518 841 Pfam D-mannose binding lectin 77 160 IPR001480 -
Car15g00518 841 Pfam Protein kinase domain 497 767 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car15g00518 841 ProSitePatterns Serine/Threonine protein kinases active-site signature. 617 629 IPR008271 GO:0004672|GO:0006468
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car15g00518 - - - mcha:111006322 1427.92
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car09g00450 Car-Chr9:2513713 Car15g00518 Car-Chr15:2806904 3.06E-77 dispersed
Car12g00321 Car-Chr12:2062608 Car15g00518 Car-Chr15:2806904 7.16E-130 dispersed
Car15g00518 Car-Chr15:2806904 Car18g01206 Car-Chr18:11640558 1.22E-147 dispersed
Car15g00518 Car-Chr15:2806904 Car15g00521 Car-Chr15:2816037 6.94E-14 proximal
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1290 . . . . . . . . . . . . . . . . Cpe13g00715 . . . . . . . . . . . . . . . . . . . . . Cme03g01093 . . . Bda01g01467 . . . . . . . . . . Car15g00518 . . . . . . . . . . . . . . . . Lsi08g00607 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010545 1 1 0 1 0 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 2 2 1 1 2 0 1 29
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
89386 PF00069 Pkinase 2.50E-51 CL0016 Car PK
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car15g00518 Car_Chr15 FPKM 26.590942 28.274256 21.909847 20.539755 32.547611 34.507355 34.914207 36.385586 39.408974 44.145042