Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car15g00530 ATGGCGGCTATGATTCCGGCACCAGTGATTTCTTCTCCGATTCAAACGGCGGTCATTCCTCCTCCGGTGGGCTCTGTGGCCACTGGAGAAGTTTTTTTGAGTTCTTCATTGTATGTGGGCGATCTGGAGCTTAACGTGAACGAGGCACAGCTTTTGGAACTGTTTAGCCGTGTGGCTCAGGTTGTCTCCCTTAGGGTTTGCAGGGATCAGACACGCAGGGTATCGCTTGGATATGCTTATGTTAATTTTAGCAATCATCAAGATGCTATGACTGCCATGGAACACTTGAATTTCTCCTCTATTAACGGGAAGCCTATCAGGATTATGATCTCTAATCGAGATCCTAGCATTCGGAAAAGTGGCTATGCAAATGTTTTTATCAAAAATCTGGACGCATCAATTGATAACAAAGCATTGCATGATACATTTGCTTCTTTCGGTACTGTTCTTTCTTGTAAAGTTGCGCTTGATAGCAATGGTCATTCAAAAGGTTATGGATTTGTGCAATTTGATACCAAGGAAGCAGCCGAAAGTGCCATAGTAAAGTTGAATGGCATGCTCCTCAATGACAAGCAAGTATATGTTGGCCATTTCATTCGACGCCAGGATAGGATGCGAGCAAATGAATTACAATTTACTAATGTTTACGTAAAAAATTTACCAGAAAATATGATGGACGATGGCCTAAAAAATCTGTTTGGTGTACATGGTACCATTACTAGTGCAGTTGTTAAGACCGATTCAAATGGAAAGTCCAAAGGTTTTGGTTTTGTTAACTTTGAGAGCACAGACTCTGCTGCTGCTGCAGTTGAAAAGCTGAATGGTACCCTCATTGGTGAGGACAAGATTTTGTACGTAGGCAAGGCTCAAAGGAAAGCAGAAAGGGAGGCTGAATTGAAAGAAAAATTCGAACGGGATAGAAAGATCAGATTTGATAAATTACAAGGCGCAAATTTGTACATAAAAAATCTTGATGACCATATTGATGATGAGAAGCTTAAAGAATTATTCTCCGAGTATGGAACAATCACATCATGCAAGGTTATGCTTGACGAAAATGGAGTGAGCAAGGGGACTGGTTTTGTTGCCTTTTCTTCACCAGATGATGCAGCTAGAGCCATAAATGAAATGAATAGAAAGATGAAAGGAAGGAAGCCTCTGTATGTGGCTGTTGCCCAGCGCAAGGAAGAGAGAAAGGCCCAGCTACAGACACAGTTTGCCCATATCCGAGTAGCTAGTGAAATATCATCACTGACCTCAGGAATGCCAGGATTTCATCCAGGGGCACACCGACTTGCTCCTCAGCAGCTGTATTATGGTCAGGGAAACCCCGGGCTGGTGCCCCCACCGCCTGGATACAGCTTCCAGCCTCAACTTATGAGCGGAATGCGACCTAGTATGGGCCCTAACTTCATCATGCCTTACCAGTTTCAGAGACAAGTACAGCCCGGGCCACGCTCGGGGATCAGGCGTGGTGGAAATTCACAACCTGTACATCAGCAGCAGCAGCAGCAGCAGCAGCAGTTAATGCTCCGTGGCGCTGGACAAGGTTATAGATACATGAACAATGCACGAAATGGATTAGAGCCGCCGGTCCTGCCCCATGGTCTTGTTGGTCCAATGATGCCTCTAGGTTTTGATAGTTCTGGGATGTCTAGCCCACCAATCGACATCCAGCGATCAAGGGCTGTGCCTACTTCAACACTCGCATCTGCATTAGCTTCTGCTACACCTACACATCAGCGTTTGATGCTCGGCGAGCAGCTGTATCCACTTGTAGAACGTCTCGAGCCAACTCATGCGGCAAAGGTTACTGGAATGTTGCTCGAGATGGACCAGCCAGAGGTGCTTCATCTCATTGAATCACCCGATGACTTGAAGAATAAGGTGGCTGAGGCAATGGAAGTCCTCCGCAAAGCTTCGTCGGAACCTGACCTCTCTGATCAGCTTGGTTCGTTGGTGCTGACCAAATGA 1974 45.85 MAAMIPAPVISSPIQTAVIPPPVGSVATGEVFLSSSLYVGDLELNVNEAQLLELFSRVAQVVSLRVCRDQTRRVSLGYAYVNFSNHQDAMTAMEHLNFSSINGKPIRIMISNRDPSIRKSGYANVFIKNLDASIDNKALHDTFASFGTVLSCKVALDSNGHSKGYGFVQFDTKEAAESAIVKLNGMLLNDKQVYVGHFIRRQDRMRANELQFTNVYVKNLPENMMDDGLKNLFGVHGTITSAVVKTDSNGKSKGFGFVNFESTDSAAAAVEKLNGTLIGEDKILYVGKAQRKAEREAELKEKFERDRKIRFDKLQGANLYIKNLDDHIDDEKLKELFSEYGTITSCKVMLDENGVSKGTGFVAFSSPDDAARAINEMNRKMKGRKPLYVAVAQRKEERKAQLQTQFAHIRVASEISSLTSGMPGFHPGAHRLAPQQLYYGQGNPGLVPPPPGYSFQPQLMSGMRPSMGPNFIMPYQFQRQVQPGPRSGIRRGGNSQPVHQQQQQQQQQLMLRGAGQGYRYMNNARNGLEPPVLPHGLVGPMMPLGFDSSGMSSPPIDIQRSRAVPTSTLASALASATPTHQRLMLGEQLYPLVERLEPTHAAKVTGMLLEMDQPEVLHLIESPDDLKNKVAEAMEVLRKASSEPDLSDQLGSLVLTK 657
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 2873752 2877598 + Carg01627-RA Car15g00530 162367
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car15g00530 657 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 213 291 IPR000504 GO:0003723
Car15g00530 657 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 35 113 IPR000504 GO:0003723
Car15g00530 657 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 317 394 IPR000504 GO:0003723
Car15g00530 657 ProSiteProfiles Poly(A)-binding protein C-terminal (PABC) domain profile. 565 642 IPR002004 GO:0003723
Car15g00530 657 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 125 193 IPR000504 GO:0003723
Car15g00530 657 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 319 387 IPR000504 GO:0003723
Car15g00530 657 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 37 107 IPR000504 GO:0003723
Car15g00530 657 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 215 283 IPR000504 GO:0003723
Car15g00530 657 Pfam Poly-adenylate binding protein, unique domain 573 637 IPR002004 GO:0003723
Car15g00530 657 MobiDBLite consensus disorder prediction 481 508 - -
Car15g00530 657 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 123 195 IPR000504 GO:0003723
Car15g00530 657 MobiDBLite consensus disorder prediction 493 508 - -
Car15g00530 657 Coils Coil 286 306 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car11g01101 Car-Chr11:8668681 Car15g00530 Car-Chr15:2873752 0 dispersed
Car14g00231 Car-Chr14:1082388 Car15g00530 Car-Chr15:2873752 1.00E-141 dispersed
Car15g00530 Car-Chr15:2873752 Car19g00450 Car-Chr19:6228990 0 dispersed
Car04g02381 Car-Chr4:19080168 Car15g00530 Car-Chr15:2873752 0 transposed
Car15g00530 Car-Chr15:2873752 Car04g02378 Car-Chr4:19068992 5.79E-09 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car15g00530 K13126 - csv:101219081 1040.02