Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car15g00534 TCTTCTTCTTCTTCTTCTTCTTCTTCTTCGTCTTCGTCTTCGTCTTTGTGTTCTTCATTCGTCAACTACTCAAGCTCTTGCTTCGTTATTCTTCCTTTTTTTTTGCTCTCTATTTCTCTGTTCTTAGTTTTTAGCTCATCAGATGAGGCACAATTCCAAGAATCAACCTCAGGAAATTTGCAGAGAACATGGGCTGAATTATGTTGTTTCGGTTGCTCGTGCCTACAGCTTTTCTGGCCGAGAGTGGTCTTGCGCAAATTGCTCAATATCAGCGCCTTAGAGTCGGATTACAGTGCCGATACCGAAGATGATGAGGATGTTAATTCTTCCGATTCTGAAATCGAAGAATGTCGTTTTAGGGGAAGAGAATCGCGCTTTAAGGTAGACAACAGAGATGAACCACTGGTTGATGCTAATGATGTGCTGCCGAGGTTGAGAAGAAGAAATTCAGAAACATTTAGGACGCAATATATAAACACAAAAGAACTCAGAATATGTGTTGGGACTTGGAATGTTGGTGGAAAACTACCTCCTGAAGATCTAGATATTGATGGCTGGATTGATACCAATGAGCCAGCTGATATCTATGTCCTTGGTTTCCAGGAGATTGTACCATTGAATGCTGGAAATATATTTGGTGCTGAAGATAGTCGCCCAGTTGCAAGGTGGGAAGATATTATCCGCGAAACATTGAATAGGGTTAGACCTACTACAACTAAGATCAAATGCTTTAGTGATCCACCATCCCCATCAAAGTTTAAGCCATTTGACGACATCCCAAATTTAGAGGAGGAGATTCTGCAGGAAAGTGATAGTGACGTTGGTGAGGAGGTGCATCCATGTGATGAAGAATTCTTTGGCAAGGAAAATGGTGACGAACTAGTCAGGGACACAAATCTAAGCTTGAAGATCCCAATTTCAGAACTCTCTGAAAATACCAAATCAGGGATACCTGTAGAACAGGATTTACTGAGGCAATATTCTTCTCCAAAGAGATTGGATCGCTTAAATTGCTTACGGACTGAAGACAGCACAGAGAATGACGAGGCTGTCTTGCAACCGGACAGAAGATTAACTAAAATGCTTAGTGGGTCAGAAAGGATTGGTTTGTGTTGGCCTGAACCTCCACTACACTTACTACCCCATATTGTTTTAGAGAGACCTAACTCATTTAAGTCAATAAAATCGTTTAAAACATCCAAGTCCTTTGGGAAATATAATTCTTTTAAGTCAACCATGAATGAAATGCCATCAGGGGCTGCTTTGCTTGGAGAAATTGATCTCGAGTCTCTCCTAAAACGAAAGAGAAGATCGTCATATGTTAGAATAGTAAGTAAGCAAATGGTTGGTATTTTCCTCACAATATGGGTTCGTAAGAGTTTGCGAAGGCACATTCAGAATGTAAATGTATCTACTGTTGGTGTTGGTGTAATGGGCTACATCGGCAACAAGGGATCCATATCTGTCAGCATGTCCATATATCAGACCCTATTTTGCTTTATATGCACTCACCTGACTTCAGGTGAAAAGGAGGGGGATGAACTTAAAAGAAATGCTGATGTGAGCGAAATACATAGAAGAACTTCATTCCATCCACTTAATGGTATTGGGTTTCCTAAAGTGATCCACGACCATGAGCGGATAATCTGGCTGGGTGATTTAAATTACCGCATCAACTTGTCTTATGAGAAGACAAGAGAGCTTATCTCGAGAAAAGAATGGTCTAGGTTGGCTGAGAGTGATCAGTTATTGCGGGAGCTTAAGAAGGGTCGTACATTTGATGGATGGACTGAGGGAAACCTAAATTTTCCACCAACCTATAAATACGAGAATAATTCAGAAAAGTATTGTGGCGAAGATCCAAAAGTTGGAAGGCGTACTCCAGCATGGTGTGACCGTATACTTTCATATGGCAAAGGATTGAAATTGTGCAGTTACAGGAGGACTGAAATTAACTTTTCTGATCATAGACCAGTGACAGCCACCTATGTGGCCGAGGTCGAGGTTTTCTGTCCCCGTAAGCTACAGCGAGCTCTGACGTTTACAGATGCAGAGATCGAAAAACAAGTAGCAATCGATGTATACTGA 2088 41.24 SSSSSSSSSSSSSSSLCSSFVNYSSSCFVILPFFLLSISLFLVFSSSDEAQFQESTSGNLQRTWAELCCFGCSCLQLFWPRVVLRKLLNISALESDYSADTEDDEDVNSSDSEIEECRFRGRESRFKVDNRDEPLVDANDVLPRLRRRNSETFRTQYINTKELRICVGTWNVGGKLPPEDLDIDGWIDTNEPADIYVLGFQEIVPLNAGNIFGAEDSRPVARWEDIIRETLNRVRPTTTKIKCFSDPPSPSKFKPFDDIPNLEEEILQESDSDVGEEVHPCDEEFFGKENGDELVRDTNLSLKIPISELSENTKSGIPVEQDLLRQYSSPKRLDRLNCLRTEDSTENDEAVLQPDRRLTKMLSGSERIGLCWPEPPLHLLPHIVLERPNSFKSIKSFKTSKSFGKYNSFKSTMNEMPSGAALLGEIDLESLLKRKRRSSYVRIVSKQMVGIFLTIWVRKSLRRHIQNVNVSTVGVGVMGYIGNKGSISVSMSIYQTLFCFICTHLTSGEKEGDELKRNADVSEIHRRTSFHPLNGIGFPKVIHDHERIIWLGDLNYRINLSYEKTRELISRKEWSRLAESDQLLRELKKGRTFDGWTEGNLNFPPTYKYENNSEKYCGEDPKVGRRTPAWCDRILSYGKGLKLCSYRRTEINFSDHRPVTATYVAEVEVFCPRKLQRALTFTDAEIEKQVAIDVY 695
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 2904525 2911204 + Carg01623-RA Car15g00534 162371

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car15g00534 - - - bhj:120075315 1158.28
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Car04g02373 Car15g00534 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car09g00159 Car-Chr9:751444 Car15g00534 Car-Chr15:2904525 1.58E-12 dispersed
Car15g00534 Car-Chr15:2904525 Car16g01024 Car-Chr16:8763660 1.12E-155 dispersed
Car15g00534 Car-Chr15:2904525 Car04g02373 Car-Chr4:19040626 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1334 . . . . . . . . Cmo04g02580 Cmo15g00580 . . . . . . Cpe13g00701 Bhi04g01737 . . . . . . Cla08g00742 Cam08g1169 Cec08g0759 Cco08g0867 Clacu08g0876 . Cre08g0677 . . Cone17ag0768 Cone20ag0358 . . . . . . . Bda13g01416 . . Bma01g01429 . . . . . . Car04g02373 Car15g00534 Cpe01g02134 . . . . . . . . . . . . . . . Lsi08g00578 . Chy03g00484 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003115 1 10 2 1 2 1 2 1 1 1 1 1 1 1 1 2 1 2 2 1 1 1 1 1 1 1 1 5 4 1 52
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car15g00534 Car_Chr15 FPKM 7.842105 6.894351 9.987094 9.176064 8.055837 9.840329 10.470224 12.370433 11.965028 16.138742