Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car15g00536 ATGAGAGATTCACCTGATATTTTGGTGCACGAGGTGAAAGACGCAAAAAATAAGGCCGTCAAGTTTTCTGCAACACTTAATGTCGGAGAAAATAAGGAGTTTGATTTTGTACGTACCTTATATGAAGGGGCTGTAGCTGGAGGTGCTGCTGGCCTCGTTGTAGAAGCTGCTTTATATCCAATTGATACAGTCAAAACTCGTCTACAGGCTGTTCATGGAGGAGGAAAAGTTGTACTAAAGGGTCTTTATTCTGGGTTGGCTGCAAATCTTGTTGGGATGTTGCCTGCCACTGCCATTTTCGTTGGTGTATATGAACCAACCAAGCAGAAATTGCTCAATTCTCTCCCTGAAAACCTCAATGCTTTAGCTCATCTGACTGCAGGTGTCATAGGAGGAGTGGCTTCATCGATCATCCGTGTACCAACAGAGGTTGTTAAGCAAAGGATGCAGACTAGCCACTTTGCATCTGCATCGAATGCTGTCCACGTTATTGTTTCAAGGGAAGGTTTTAAAGGCCTTTATGCGGGGTATGGATCTTTCTTACTACGAGATTTGCCATTTGATGCCATTCAGTTCTGCATTTACGAACAACTTAGGATAGGGTACAAGCTAGCGGCGCAAAGAGATCCAAATGACCCTGAGAATGCTATAATTGGTGCCTTTTCTGGTGCTATTACTGGGGCTATAACCACTCCTCTTGATGTGATCAAAACTAGATTAATGATTCAGGGATCAAGTAGTCAATATCAAGGTATTCGTGATTGTTGTAGGACCATAATGAAGGAAGAAGGAGCACGTGCCTTTTTAAAGGGCATAGGGCCAAGGGTATTGTGGATAGGGTTAGGAGGCGCTATATTTTTTGGCGTTCTTGAAAAAACAAAGCAGATGCTTGCTGATAAGAGAAGAAGCGAAGCGCATCCAGGTTTGGAACTGAGGCGTTCAACGACTTGTCTTCTTATATTGATCCTAGAGGTATCAAGAAACCCTTGA 990 43.23 MRDSPDILVHEVKDAKNKAVKFSATLNVGENKEFDFVRTLYEGAVAGGAAGLVVEAALYPIDTVKTRLQAVHGGGKVVLKGLYSGLAANLVGMLPATAIFVGVYEPTKQKLLNSLPENLNALAHLTAGVIGGVASSIIRVPTEVVKQRMQTSHFASASNAVHVIVSREGFKGLYAGYGSFLLRDLPFDAIQFCIYEQLRIGYKLAAQRDPNDPENAIIGAFSGAITGAITTPLDVIKTRLMIQGSSSQYQGIRDCCRTIMKEEGARAFLKGIGPRVLWIGLGGAIFFGVLEKTKQMLADKRRSEAHPGLELRRSTTCLLILILEVSRNP 329
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 2919035 2926057 - Carg01621-RA Car15g00536 162373

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car15g00536 329 ProSiteProfiles Solute carrier (Solcar) repeat profile. 38 110 IPR018108 -
Car15g00536 329 ProSiteProfiles Solute carrier (Solcar) repeat profile. 214 296 IPR018108 -
Car15g00536 329 Pfam Mitochondrial carrier protein 214 300 IPR018108 -
Car15g00536 329 Pfam Mitochondrial carrier protein 41 113 IPR018108 -
Car15g00536 329 Pfam Mitochondrial carrier protein 119 199 IPR018108 -
Car15g00536 329 ProSiteProfiles Solute carrier (Solcar) repeat profile. 119 201 IPR018108 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car15g00536 K15111 SLC25A26; solute carrier family 25 (mitochondrial S-adenosylmethionine transporter), member 26 - csv:101220750 536.569
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Car04g02371 Car15g00536 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car04g01430 Car-Chr4:8287911 Car15g00536 Car-Chr15:2919035 9.39E-27 dispersed
Car15g00536 Car-Chr15:2919035 Car20g00286 Car-Chr20:1658473 1.99E-36 dispersed
Car18g00806 Car-Chr18:9135006 Car15g00536 Car-Chr15:2919035 1.38E-12 dispersed
Car02g00418 Car-Chr2:3285379 Car15g00536 Car-Chr15:2919035 1.32E-135 transposed
Car02g01217 Car-Chr2:8256739 Car15g00536 Car-Chr15:2919035 1.24E-08 transposed
Car04g02347 Car-Chr4:18856135 Car15g00536 Car-Chr15:2919035 5.17E-07 transposed
Car15g00536 Car-Chr15:2919035 Car04g02371 Car-Chr4:19023545 1.36E-179 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1331 . . . . . . . . Cmo04g02578 Cmo15g00582 . . . . Sed05g0790 . Cpe13g00699 Bhi04g01747 Tan11g1101 Cmetu03g1735 . Hepe02g2813 . Lcy10g1370 Cla08g00747 Cam08g1174 Cec08g0764 Cco08g0871 Clacu08g0880 . Cre08g0682 . . . Cone20ag0664 . . . Cme03g01052 . . . . . . . . . . . . . Car04g02371 Car15g00536 Cpe01g02132 . . . . . . . . . . . . . . . Lsi08g00573 . Chy03g00489 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002717 3 2 1 1 1 1 3 1 1 2 1 1 3 2 2 2 2 2 3 1 2 2 2 2 2 2 2 3 2 2 56
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car15g00536 Car_Chr15 FPKM 39.911217 45.346004 48.848915 52.901596 2.100354 3.327501 1.893336 2.095221 2.815816 2.109824