Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car15g00543 TGTGTTACGGGGTTAACTCAATTCTTTGTGCAGGATCAACATATTGAAGGACTGCCACATTACAAAGATATCAAACAAAATGAATTCTGTTACCGAAAACACAAGAAGCAGAAGGAGGAGGATATCGCCGTCTGTGTCTGCAGATTTGATGCTAATGATAACGATAGTGGTTGTGGGGAAGGGTGCTTGAATGTACTGACCAGCACTGAGTGTACTCCTGGATATTGTCCCTCTGGTGTTCATTGCAGAAATCAGAGGTTTCAGAAATGTGAGTATGCAAGAACAAAGTTGTTCAACACTGAAGGTCGTGGGTGGGGCCTTTTAGCTGATGAGAATATAAAGAGTGGACAATTTATTATTGAATATTGTGGGGAAGTTATATCTTGGAAGGAAGCAAAACGGAGATCCCACACTTATGAAAATCAGGGACTCAAAGATGCTTACATCATCTCACTCAATGCCTCTGAATCAATTGATGCAACTAGGAAGGGAAGTCTTGCTAGATTTATAAATCATTCCTGTCCGAACTGTGAGACAAGGAAGTGGAATGTGTTGGGTGAAATAAGGGTTGGAATATTTGCAAAGCAAGACATTACCATTGGGACTGAATTGTCATATGATTATAATTTCGAATGGTATGGAGGTGCCAAGGTTCGCTGCCTCTGTGGTGCAAGCAGCTGTTCAGGATTCCTTGGAGCCAAGTCTCGTGGGTTCCTGGAGGATACCTATTTGTGGGAAGATGACGATGATAGGTATTCTGTTGAGAAAATTCCACTGTACGATTCTGCAGAGGATGAGCCATTCGTTAAGCTCCACACTGTATTAAATAACCCATATTCTGAGTTTGAGGGTTATCTGAAAAATGAGAACCCAATGATCTTGGACGATAATTTGGGAGCGGAACAGCAGCTGGTATCCACTGCATTAATTGATACCTCGAAGAATTCAGTTCAATTACAAAATATAGTTGTGGGAGAAATTAAAAATGAAGCAAAAGAGGAGCCAGAAGACCATCCACAGAATACGCAGCAGACCTTTTCCCAGCAGAATGCAATGATATCTCGAATCCGAAGTAACACCGCATGCCGTAATTATCGCATTGGACCTGGACCTGCGGCCAAAAAACGAGCAAGAAACTTAACGAATGGAAGGACGAAAAATTTTACCCTGAAGCAAGTAGATGCAAAATATGTTGCTCGATTGTTAGAGTTGAAGGAAGCACAAGAAGAAGTCTTACAGTATGAGGAAACGAAGAATAAAGCTACCTCCGAACTTGATTTGTTGTACAATGAAATACGACCCGCCATTGAAGAATATGAGAGGGACAGCCAAGACAGTGTAGCTACCAGTGTTGCGGAAAAGTGGATAGAAGCAAGCTGTTTGAAACTGAAGGCGGAATTTGATCTTTATTCTTCTATAGTCAGAAATGTTGCTTGCACTCCATTAAGGTCAGGTATTGGCTCTGGACTACAGGGAAATGCTTCTGTTCAACACGTCCATTTCAGGTATTTAAGTTGGAAAGATATTCACTCCTTCAAGAGTTTTTCTTATAATTATTTGATGCTATGCCACTGA 1575 41.21 CVTGLTQFFVQDQHIEGLPHYKDIKQNEFCYRKHKKQKEEDIAVCVCRFDANDNDSGCGEGCLNVLTSTECTPGYCPSGVHCRNQRFQKCEYARTKLFNTEGRGWGLLADENIKSGQFIIEYCGEVISWKEAKRRSHTYENQGLKDAYIISLNASESIDATRKGSLARFINHSCPNCETRKWNVLGEIRVGIFAKQDITIGTELSYDYNFEWYGGAKVRCLCGASSCSGFLGAKSRGFLEDTYLWEDDDDRYSVEKIPLYDSAEDEPFVKLHTVLNNPYSEFEGYLKNENPMILDDNLGAEQQLVSTALIDTSKNSVQLQNIVVGEIKNEAKEEPEDHPQNTQQTFSQQNAMISRIRSNTACRNYRIGPGPAAKKRARNLTNGRTKNFTLKQVDAKYVARLLELKEAQEEVLQYEETKNKATSELDLLYNEIRPAIEEYERDSQDSVATSVAEKWIEASCLKLKAEFDLYSSIVRNVACTPLRSGIGSGLQGNASVQHVHFRYLSWKDIHSFKSFSYNYLMLCH 524
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 2965011 2977249 - Carg01613-RA Car15g00543 162380

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car15g00543 524 Pfam SET domain 104 209 IPR001214 GO:0005515
Car15g00543 524 Coils Coil 404 431 - -
Car15g00543 524 ProSiteProfiles AWS domain profile. 40 91 IPR006560 GO:0005634|GO:0018024
Car15g00543 524 ProSiteProfiles Post-SET domain profile. 216 232 IPR003616 -
Car15g00543 524 Pfam AWS domain 53 90 IPR006560 GO:0005634|GO:0018024
Car15g00543 524 ProSiteProfiles SET domain profile. 88 209 IPR001214 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car15g00543 - - - csv:101222397 887.871
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car02g00875 Car-Chr2:6258993 Car15g00543 Car-Chr15:2965011 1.20E-07 dispersed
Car15g00543 Car-Chr15:2965011 Car15g00596 Car-Chr15:3297937 8.34E-51 dispersed
Car20g00927 Car-Chr20:10054284 Car15g00543 Car-Chr15:2965011 5.37E-07 dispersed
Car15g00543 Car-Chr15:2965011 Car04g02314 Car-Chr4:18629551 7.14E-52 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1348 . . . . . . . . . Cmo15g00591 . . . . . . . Bhi04g01759 Tan11g1119 . . . . . . . . . . . . . . . . . . . Cme03g00297 . . . . . . . . . . . . . . Car15g00543 . . . . . . . . . . . . . . . . . . Chy03g00494 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010525 1 2 1 0 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 2 2 32
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
4807 PF00856 SET 3.00E-18 No_clan Car TR
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car15g00543 Car_Chr15 FPKM 9.584689 9.918939 6.941902 6.542681 10.284595 10.736719 11.671558 3.551543 4.418889 3.651502