Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car15g00552 ATGTCATTCCGAAGCATACTTCGTGATGTGCGGGATGGATTTGGAAGCTTATCGAGGCGTAGTTTTGAGGTGAGGCTGTCTGGAAATTCCAGGGGTAAATCTCATGGACCAGTTCATGAGTTTCATGATGAACCTCTGCTAATTCAGACTAGTCGATGGGCTAGCCTTCCACCCGAGTTATTGTGCGATGTGGTTCAAAGACTGGAGGCTAGTGAGAATACTTGGCCTTCTCGGAGAAATGTTGTTGCTTGTGCTGCTGTGTGTAGGTCATGGAGGGATATGTGTAAAGAAATGGTCAAAAGTCCTGAGTTCTCTGGGAAAATTACGTTCCCGATCGCCTTGAAACAGCCTGGGCCACGTGATGGCACTATTCAATGCTTTATCAAGAGGAACAAATCTAATTTAACTTATCATCTTTATCTTTGCCTTAGTCCTGGATTTCCTTTAGTTGCTCTGTCTAGCCCTGCATATGATGTTTTGAACATTAAACCATTGCATAATCATGCAGCTTTACTTGTTGAAAATGGGAAATTTCTTCTTTCTGCAAAAAGAACGAGGCGAACTACTTCTACGGAGTACGTTATATCGTTAGCCGCGGACGATATATCAAGATCGAGCAATGGTTATATCGGAAAGCTAAGATCAAATTTCCTGGGAACCAAGTTCATTATATATGATACACAGCCTCCTTACAACAGCAACCAAATCCCGACGCTTGGCCGAAGCCGAAGATTCTACTCGAAAAAGGTCTCGCCGAAGGTCCCAGCTGGAAGCTACAGCATTGCACAAATTGCATACGAGTTGAACGTATTAGGTACAAGGGGACCCCGGAGGATGAACTGCACCATGTACTCAATCCCCAATTCATCTCTTGAGCCAGGTTGTTCAGTTCCAGGCCAGCCCGAGCTCAATCCTCGCCCGCTCGAAGACTCATTTCGTAGCATGTCATTCTCCAAGTCGATCGATCATTCCACCGAGTTCAGCAGCTCCCGCTTCTCTGATGTTGCAGGAATGGTTGCTAACGAAGATGGCGAGGGGAAGGATCGACCCTTGGTTCTTCGGAACAAGGCGCCTAGATGGCACGAGCAGTTGCAGTGTTGGTGTCTCAATTTTCGTGGGAGGGTGACGGTTGCATCGGTTAAGAACTTTCAGCTGATTGCTGCAACCTCAGCTGGTGCAGAAGTGGCGGCGGCAGCAGCAGCAGCATCACAGGCACCTCCACAGCCCGCCCAACCTACGCATTCCGACCACGACAAGATCATTCTTCAGTTCGGAAAGGTCAGTAAGGACATGTTTACGATGGATTATCGATATCCGCTGTCGGCATTCCAGGCTTTTGCTATATGTCTCAGCAGCTTTGACACTAAATTGGCATGTGAATAG 1383 47.29 MSFRSILRDVRDGFGSLSRRSFEVRLSGNSRGKSHGPVHEFHDEPLLIQTSRWASLPPELLCDVVQRLEASENTWPSRRNVVACAAVCRSWRDMCKEMVKSPEFSGKITFPIALKQPGPRDGTIQCFIKRNKSNLTYHLYLCLSPGFPLVALSSPAYDVLNIKPLHNHAALLVENGKFLLSAKRTRRTTSTEYVISLAADDISRSSNGYIGKLRSNFLGTKFIIYDTQPPYNSNQIPTLGRSRRFYSKKVSPKVPAGSYSIAQIAYELNVLGTRGPRRMNCTMYSIPNSSLEPGCSVPGQPELNPRPLEDSFRSMSFSKSIDHSTEFSSSRFSDVAGMVANEDGEGKDRPLVLRNKAPRWHEQLQCWCLNFRGRVTVASVKNFQLIAATSAGAEVAAAAAAASQAPPQPAQPTHSDHDKIILQFGKVSKDMFTMDYRYPLSAFQAFAICLSSFDTKLACE 460
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 3044590 3049335 - Carg01603-RA Car15g00552 162389
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car15g00552 460 Pfam F-box domain 53 99 IPR001810 GO:0005515
Car15g00552 460 Pfam Tub family 114 455 IPR000007 -
Car15g00552 460 ProSitePatterns Tub family signature 2. 445 460 IPR018066 -
Car15g00552 460 ProSitePatterns Tub family signature 1. 371 384 IPR018066 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Car04g02358 Car15g00552 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car04g00473 Car-Chr4:2678728 Car15g00552 Car-Chr15:3044590 0 dispersed
Car15g00552 Car-Chr15:3044590 Car16g00326 Car-Chr16:2007663 0 dispersed
Car01g00895 Car-Chr1:8432076 Car15g00552 Car-Chr15:3044590 0 transposed
Car15g00552 Car-Chr15:3044590 Car04g02358 Car-Chr4:18952185 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
4810 PF01167 Tub 1.10E-110 CL0395 Car TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car15g00552 K19600 - cpep:111809239 837.025