Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car15g00555 ATGGCGTGTGTCCTCCACAATTCTCCTTCAATCTTCCCAAAAATGGAGCCAAACAAGTTGAATCTAACCAATTTGGAGCGACAATCCGGGTCCGAGATCCAAACCAATGAATTCGACTACTCAAAACGTGCACAATGGCTACGCGCCGCCGTGCTTGGAGCCAACGACGGGCTCGTATCGACCGCGTCGCTTATGATGGGAATCGGAGCTGTGAAACAAGACATCAAAGCCATGATCCTCACCGGGTTTGCCGGGTTGGTCGCCGGTGCGTGTAGCATGGCGATCGGCGAGTTTGTGTCGGTTTACTCACAATTGGACATTGAAGTAGCTCAAATGAAAAGAGAGAAGCTACAAAGAAGAAATTTAGAAGGGCAAGAGCTAGAGAGCAAAGATGATGAGAAGCTACCAAATCCACTCCAAGCCGCCGCAGCCTCCGCCTTGGCGTTCTCCTTAGGAGCAATGGTGCCGTTGTTGGCAGCTTCGTTTATAAGAGAGTACAAGGTAAGGCTTGTGGTGGTTGTGGCAGCGGTGACGTTAGCGCTCGGCGTGTTCGGGTGGTTGGGTGCCCTCCTTGGAAAAGCATCGCCGATCAAATCCGCCATCAGGGTGTTGGTCGGAGGTTGGTTAGCCATGGCTATAACCTTTGGCTTGACGAAACTAATCGGACGCAGCTCCGATCACCGACGACGCTGGTCCGATTCAAAGCGGTCGCCATTTCCGGTGAAGAAGCAAACTAATCATCCCACTTCTACGACTCTACTTACACAGAAGTCCAGGCATTGGGATCCTAGGCTTTCTTCTCCTTATTCCCTCAAATGCTTCCTAAGGAACTTTTCTCTATGGTCAATGAAGAAAGACCCAGACCTTGAATCAGCTCTATCTCGTAATCGTCGATGGATTGTCAATAATCAAATCAAGAATATCGTCCTTCGTTGCCCCAATCAGACGGCACCTGTAAAATTTCTCCAAAAGAAGTTTAAAACCCTCGACTGTCAAGGAAAAGCCCTTAACTGGCTGAAAAAGTACCCGATCTGCTTTGAAGTTTATCTCCACAATGATGAGTACTATTTTCGGCTGACAAAGAGGATGATGGCTTTAGTTGAAGAGGAAGAAACTATCAAAGATATGCAGGAGCCTGCTTTTGTCGAGCGGTTGGCAAAGTTGCTGATGATGGCTTCGAATCAGAGACTAAATGTTTTAAAACTTGGTGAATTAAAGCGGATTTTTGGGCTCCCAGATGATTACTTGATAAGAATCGTTCCCAAACATTCAGATATGTTTCGAATTGTAAATTATACTGGAAAAAGAAACTCAATGGAAATAGAACTGGTCTCTTGGAAACCAGAACTAGCAATTTCCAGCATAGAATCTTCAGCCTGCAAGCATGGGGTTGAGCCAGCTTTCTCCTGCTCACTGCCAACGACTTGGGTAAATTCGTGGGAAAAGTTTCATGAATTTAATGCCTCTCCATATATTTCACCATATGCGAACCATGCAGGGTTGGTGAAAGATACAAAGGAGATGGAAAAGAGGACAGTGGGGTTGATCCATGAGATATTGTCGCTGACATTATGGAAGAAAGCATCAATTATGAAGCTTGGACATTTCAGCAGGGAATTCGGTCTGCCATTGAAGTTGAATGCGTTGCTGCTTAAGCACCCTGGCATATTCTATGTCTCAAACAAGTATCAGATTTACACTGTTCTTCTTAGAGAAGGGTATAATGGATCAGAACTAATTGAGAAAGATCCACTAGTGGTTGTAAAAGAGAAGTTTGGAGAACTGATGCAGGAGGGACTTCATGAATATAACAGGCGACATCATTTGATGAATTTAGAAAAGAAGAGAATGAAGGGGATGCTTTTGGGTAGATCAGAAAAGAACAAGAGGAAAGATTCTGAACCAGATGATCTTGATGATCAAGGAAACAATCTAGGAGGTTTACTTGAGCCAGAGGAAAGAAAAAGATTCTATCAGTCTCTCTTTGATGAT 1992 44.73 MACVLHNSPSIFPKMEPNKLNLTNLERQSGSEIQTNEFDYSKRAQWLRAAVLGANDGLVSTASLMMGIGAVKQDIKAMILTGFAGLVAGACSMAIGEFVSVYSQLDIEVAQMKREKLQRRNLEGQELESKDDEKLPNPLQAAAASALAFSLGAMVPLLAASFIREYKVRLVVVVAAVTLALGVFGWLGALLGKASPIKSAIRVLVGGWLAMAITFGLTKLIGRSSDHRRRWSDSKRSPFPVKKQTNHPTSTTLLTQKSRHWDPRLSSPYSLKCFLRNFSLWSMKKDPDLESALSRNRRWIVNNQIKNIVLRCPNQTAPVKFLQKKFKTLDCQGKALNWLKKYPICFEVYLHNDEYYFRLTKRMMALVEEEETIKDMQEPAFVERLAKLLMMASNQRLNVLKLGELKRIFGLPDDYLIRIVPKHSDMFRIVNYTGKRNSMEIELVSWKPELAISSIESSACKHGVEPAFSCSLPTTWVNSWEKFHEFNASPYISPYANHAGLVKDTKEMEKRTVGLIHEILSLTLWKKASIMKLGHFSREFGLPLKLNALLLKHPGIFYVSNKYQIYTVLLREGYNGSELIEKDPLVVVKEKFGELMQEGLHEYNRRHHLMNLEKKRMKGMLLGRSEKNKRKDSEPDDLDDQGNNLGGLLEPEERKRFYQSLFDD 664
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 3060715 3065372 - Carg01600-RA Car15g00555 162392
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car15g00555 664 Pfam Plant organelle RNA recognition domain 284 599 IPR021099 GO:0003723
Car15g00555 664 MobiDBLite consensus disorder prediction 228 248 - -
Car15g00555 664 MobiDBLite consensus disorder prediction 624 638 - -
Car15g00555 664 MobiDBLite consensus disorder prediction 624 651 - -
Car15g00555 664 Pfam VIT family 47 123 IPR008217 GO:0005384|GO:0030026
Car15g00555 664 Pfam VIT family 127 218 IPR008217 GO:0005384|GO:0030026
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car09g00491 Car-Chr9:2736684 Car15g00555 Car-Chr15:3060715 3.90E-37 dispersed
Car09g00979 Car-Chr9:6229726 Car15g00555 Car-Chr15:3060715 2.01E-83 dispersed
Car15g00555 Car-Chr15:3060715 Car19g00252 Car-Chr19:2782198 1.84E-82 dispersed
Car17g01095 Car-Chr17:8492067 Car15g00555 Car-Chr15:3060715 1.58E-55 transposed
Car15g00555 Car-Chr15:3060715 Car04g02354 Car-Chr4:18932856 2.96E-119 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car15g00555 - - csv:101203802 739.184