Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car15g00559 ATGGCGGATATGGATTTCGTTGAGGGTGTTGGAGAGAGTTCTTCGCCGCCTCGAAGCTTCGGTGGCTTCTGTGCTGTCCACGATGTTCGGAACGATGTTTATACTCGGCTAGTTGAGCGTGGACATGAGGAGGCAGTTTCTAATCCCCAATTTCGTGAGAATTTGGATGCTCACTTCAATCGCTTGCCTCCGAGTTATGGACTTGATATTAACATGGAGAAGGTGGAAGATGTTTTGTTACATCAAAAGCTTCTTTCCCTGGCAAAGGATCCTGAGAAGTGCCCTGTTTACCACATTCGTTTTCTGGAGCACTTAAGTACTAAGTCAGATGGCAATGATGATCACGTTTTTATTGATAGTATTCTATTAAGTGGCTCATCTGATGAAGCAGCTGATAGAAGACTTCCACTGTCGCACGAGAGAACTCAAGGAAACATAATTGACTTTGAGCCTTGTTCCAAGCTTGAGGACTTAAATTTGGATGTTGGAAAGAACTCAAAGGCCATGGTTGAGAGATATTATAAGGACAATTTTTCCAAAAGGCAGGGCAGTATTGCACATGTTCCAATACATGAAGTGATATTTTCAACGATTGACAAGCCAAAGCTTCTTAGCCAGCTTTCTGCTTTGCTTTCTGATATAGGACTTAACATCCGAGAAGCACATGTGTTTTCGACATCTGATGATTACTCCTTGGATGTATTTGTCGTGGATGGATGGCCTGTTGAGGAAACTGGTGGTTTGTATGAAGCTATGGAAAAAGCAGTGGCTAGATATGAGGGGTCATGGTCTGGTTCTTCACATTCTCATCCAGCAGTCAAGAAAACATTAGACGCCCAGAGAAAACCAGAAGATTGGGAAATAAATAGACGGTTACTGAAGATAGGTGAAAGAATTGCATCTGGATCTTGTGGTGATTTGTATCATGGATTATATCTTGGTCATGATGTAGCTGTCAAGATATTAAGATCTGAAGATCTAAATGATGATTTAGAGGATGAATTCAATCAAGAAGTGGCAATTCTCAGGAAGGTCCAGCATAAAAATGTAGTTCGTTTTATAGGTGCGTGTACAAACTCTCCACATTTGTGTATTGTAACAGAGTATATGCCAGGAGGGAGTCTCTATGATTACTTGCACAAGAATCATTGCGTGTTGAAGCTCTCACAACTGCTGAAGTTTGCTATTGATGTTTGTGAAGGAATGGAGTACTTACATTTAAATGACATTATTCATAGAGACTTGAAGACAGCAAACCTGCTAATGAACACTCAACATGTTGTGAAGGTGGCAGATTTTGGAGTTGCGCGATACCAGAGTCAAGGAGTAATGACAGCAGAAACTGGAACATACAGATGGATGGCACCTGAGGTAATAAATCATCTGCCATATGATCAGAAAGCAGATATTTTCAGTTTTGCGATTGTGCTTTGGGAACTAGTAACAGCAAAGGTTCCGTATGATTCCATGACACCATTACAAGCCGCCCTTGGAGTAAGACAGGGACTGCGTCCAGATCTTCCCAAAAGTGCTCACCCCAAATTGTTGGATTTGATGCGACGATGTTGGGATGCACAACCTGAAAATCGGCCTCCATTTACTGAGATAAAAGTTGAACTTGAAAATCTGCTCGAAGAAGTTCAGATGTGTACAAAATATGAAGAAAATTATGCAGCAGTTAATGGCAGCTAA 1692 41.37 MADMDFVEGVGESSSPPRSFGGFCAVHDVRNDVYTRLVERGHEEAVSNPQFRENLDAHFNRLPPSYGLDINMEKVEDVLLHQKLLSLAKDPEKCPVYHIRFLEHLSTKSDGNDDHVFIDSILLSGSSDEAADRRLPLSHERTQGNIIDFEPCSKLEDLNLDVGKNSKAMVERYYKDNFSKRQGSIAHVPIHEVIFSTIDKPKLLSQLSALLSDIGLNIREAHVFSTSDDYSLDVFVVDGWPVEETGGLYEAMEKAVARYEGSWSGSSHSHPAVKKTLDAQRKPEDWEINRRLLKIGERIASGSCGDLYHGLYLGHDVAVKILRSEDLNDDLEDEFNQEVAILRKVQHKNVVRFIGACTNSPHLCIVTEYMPGGSLYDYLHKNHCVLKLSQLLKFAIDVCEGMEYLHLNDIIHRDLKTANLLMNTQHVVKVADFGVARYQSQGVMTAETGTYRWMAPEVINHLPYDQKADIFSFAIVLWELVTAKVPYDSMTPLQAALGVRQGLRPDLPKSAHPKLLDLMRRCWDAQPENRPPFTEIKVELENLLEEVQMCTKYEENYAAVNGS 563
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 3078254 3088487 + Carg01596-RA Car15g00559 162396
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car15g00559 563 ProSitePatterns Serine/Threonine protein kinases active-site signature. 410 422 IPR008271 GO:0004672|GO:0006468
Car15g00559 563 ProSiteProfiles Protein kinase domain profile. 293 544 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car15g00559 563 Pfam Protein tyrosine and serine/threonine kinase 293 539 IPR001245 GO:0004672|GO:0006468
Car15g00559 563 ProSiteProfiles ACT domain profile. 192 266 IPR002912 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Car01g01564 Car15g00559 CCT
Car01g01564 Car15g00559 ECH
Car05g00693 Car15g00559 CST
Car04g02350 Car15g00559 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car15g00559 Car-Chr15:3078254 Car19g00592 Car-Chr19:7307944 2.51E-172 dispersed
Car04g02351 Car-Chr4:18912948 Car15g00559 Car-Chr15:3078254 1.93E-130 transposed
Car15g00559 Car-Chr15:3078254 Car04g02350 Car-Chr4:18906157 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
89389 PF07714 PK_Tyr_Ser-Thr 1.30E-71 CL0016 Car PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car15g00559 - - mcha:111011813 1021.15