Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car15g00570 ATGGGATGGAGGATGTTCTTCTACACTCTGTTTATTCTCTTCAATATGGTTGAATCCTCCAGTAGATCAGGGAAGATGTGGTTACTGAATCTAAGCACCGAAGCAGCTCCTAACTTCAGCTGGACAATTTTCAGTGCTGGTGTATTCGTCATTGTTGCACTTGTTCTTTCCACACTTCTCATCATTGAGCATTTAGCTTCTTATAATCAGCCAGAGGAACAGAAGTTTCTGATTGGTCTTATACTGATGGTTCCTGTTTACTCTCTAGAATCGTTCCTGTCTTTGTTAAATTCAAATGGTGCATTCAATTGGGAAGTGATACGGGACTGCTATGAGGCTTTTGCATTATATTGCTTTGAAAGATACCTTATTGCTTGCTTGGGTGGTGAGAAACGTACACTTGAATTCATGGAAAGTCAGACTGTTTTTGATTCTGACACACCTCTTTTGCCGGAAAAATATGCATATGGGGTTGTAGAACATCCTTTTCCCTTAAATTGCTTCGTAAGGGATTGGTATCTTGGTTCTGACTTCTATCATGCGGTTAAAATTGGTATCGTTCAATATATGATATTGAAGATGATATGTGCTCTCCTAGCTATGATTCTTGAAAGTTTCGGGGTCTATGGAGAAGGAAAGTTTAAGTGGAGATATGGCTATCCCTATTTGGCGGTTGTACTTAATTTTAGTCAATCGTGGGCCCTGTATTGTCTTCTCCAATTCTATTCTGTCACGAAGGACAAATTGGAATCAATTAAACCATTGGCGAAGTTTCTTGTGTTCAAGTCGATCGTTTTCCTCACTTGGTGGCAAGGTGTTGCCGTTGCCTTTCTTTTCTCAGTAGGAGCTTTTAAAGGGTCCTTAGCTCGGGAGCTAAAGACGCGCATACAAGATTACCTGATATGCATTGAGATGGGTATTGCTGCCGTCGCACATGTTTACACCTTTCCAGCAGTACCTTATAAACGTGGAGAAAGATGTGTTCGTAATGTTGAGGTGCTAACCGACTACGCATCCTTAGGAACGCCACCTGATCCAGAGGAGGTTAGAGACTCCGAACGAATAACCAAAATACGCTTGGGTCGCCATGACGAGAGAGAGAAGCGTTTGAGTTTTCCCCAGAGTGTTCGAGATGTTGTAATTGGAAGCGGCGAAATTATTGTCGATGACATGAAGTATACAGTCACACACGTCGTCGAACCAGTCGAAAGGGGTATTTCAAAACTTAACAAAACGATCAATCGGTTCTCTGAAAATGTTAAACGGCATCAAGAGCAGCGGAAGAGTGCGAAGGACGATAGTTATCTGATTCCTTTGAAGTCCTGGTCGAGAGAATTTTCTGAAGTTGAAGAAAATGTTACTCAAGGCAGCGTCAGTGACAGTGGAATATCCAATGGTAAGAGACAAAGAATTGGCAGATAA 1422 41.77 MGWRMFFYTLFILFNMVESSSRSGKMWLLNLSTEAAPNFSWTIFSAGVFVIVALVLSTLLIIEHLASYNQPEEQKFLIGLILMVPVYSLESFLSLLNSNGAFNWEVIRDCYEAFALYCFERYLIACLGGEKRTLEFMESQTVFDSDTPLLPEKYAYGVVEHPFPLNCFVRDWYLGSDFYHAVKIGIVQYMILKMICALLAMILESFGVYGEGKFKWRYGYPYLAVVLNFSQSWALYCLLQFYSVTKDKLESIKPLAKFLVFKSIVFLTWWQGVAVAFLFSVGAFKGSLARELKTRIQDYLICIEMGIAAVAHVYTFPAVPYKRGERCVRNVEVLTDYASLGTPPDPEEVRDSERITKIRLGRHDEREKRLSFPQSVRDVVIGSGEIIVDDMKYTVTHVVEPVERGISKLNKTINRFSENVKRHQEQRKSAKDDSYLIPLKSWSREFSEVEENVTQGSVSDSGISNGKRQRIGR 473
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 3152632 3156576 - Carg01585-RA Car15g00570 162407

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car15g00570 473 MobiDBLite consensus disorder prediction 448 466 - -
Car15g00570 473 MobiDBLite consensus disorder prediction 448 473 - -
Car15g00570 473 Coils Coil 406 433 - -
Car15g00570 473 Pfam Organic solute transporter Ostalpha 43 321 IPR005178 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car15g00570 - - - csv:101203343 879.782
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Car04g02341 Car15g00570 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car05g00920 Car-Chr5:8934457 Car15g00570 Car-Chr15:3152632 6.59E-28 dispersed
Car11g01409 Car-Chr11:11538812 Car15g00570 Car-Chr15:3152632 1.13E-160 dispersed
Car12g00770 Car-Chr12:7420709 Car15g00570 Car-Chr15:3152632 1.44E-27 dispersed
Car12g01295 Car-Chr12:11979802 Car15g00570 Car-Chr15:3152632 4.33E-103 dispersed
Car13g00550 Car-Chr13:7426128 Car15g00570 Car-Chr15:3152632 6.96E-30 dispersed
Car15g00570 Car-Chr15:3152632 Car19g00608 Car-Chr19:7573050 3.67E-138 dispersed
Car15g00570 Car-Chr15:3152632 Car04g02341 Car-Chr4:18836942 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1222 . . . . . . . . Cmo04g02543 Cmo15g00626 . . . . . Cpe06g00929 . Bhi04g01815 Tan11g1185 . . . . . Cla08g00665 Cam08g1096 Cec08g0681 Cco08g0790 Clacu08g0802 . Cre08g0606 . . Cone17ag0797 Cone20ag0396 . . . Cme03g00394 . Blo18g00220 . Bda13g01530 Bpe02g01601 Bpe14g00331 Bma01g00869 . . . . . . Car04g02341 Car15g00570 . . . . . . . . . . . . . . . . Lsi08g00526 . Chy03g00590 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005100 4 4 1 1 2 1 2 0 1 1 0 1 2 1 1 2 1 2 0 1 1 1 1 1 1 1 1 2 3 1 41
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car15g00570 Car_Chr15 FPKM 3.651025 5.413885 5.288025 5.835932 52.042294 43.956882 52.173595 4.600842 5.299993 5.314047