Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car15g00571 GGCAACTTCCCAACTGACTGTCCATTTTCGATTTCATCTCTCGTCGGTCGTCGCAGATCTGAGACCTTCCTTCTTGCCTTCTATCTGCATTTGCGATTCCACTTCATTGCCACCGCATTCACTAGTTTTGGTGCCGGATTCACGACTGTTAATTTTGAGACCTACGAGCTGAAAATGGTGCTGATATCGGTCGTTCGGGATTATATCAACAAGATGTTGCAGGACATCTCCGGCATGAAGGTTTTCATCCTCGATTCTCAGACGGTTAGTGTCGTTAGTGTGGCGTACTCACAGTCGGAGCTTCTTCAGAAAGAAGTGTTTCTGGTTGAATTGGTAGATACCATATCGATGTCAAGAGAATCCATGTATCATCTGAAAGCGGTTTGCTTTCTCAGGCCTACATCAGAGAATATACAGCTTTTACGTCGTCAGCTAGCCAATTCTAGATTTGGGGAGTATCACCTTTTTTTCTCCAACATTTTGAAGGAAACTCAGATTCATATACTAGCTGATTCAGACGAGCAGGATGTTGTGCAGCAAGTTGTGGAATTTTATGGCGATTTCATGGCCATTGATCCTTATCATTTCACTTTAAATATGGCATCAAACCACATATACATGATCCCGGCAGTTGTTGATCCTCCAAGTTTGCAACATTTCTGTGACCGAGTTGTAGATGGCCTTGCAGCACTTTTCTTGGCACTAAAACAAAGACCTGTTATTCGGTACCAAAGGACTTCTGATGTTGCCAAGAGGATAGCACAGGAAACATCAAAACTTATGTATCAGCAAGAAAGTGGTCTGTTCGATTTTCGAAGAACAGAAGTCTCCCCTTTGTTGCTGGTAATTGATAGGAGGGATGACCCGCTGACTCCCCTGCTGAATCAATGGACTTATCAGGCAATGGTTCATGAATTGTTAGGTATTCAAGACAATAAAGTGGACTTGAAAAGCATTGGGAAATCTTCAAAGGATCATCAGGAGGTTGTGCTATCATCAGAGCAAGATTCGTTTTATAAAGCTAACATGTACAATAATTTTGGAGAAATTGGAATGAATATCAAGAAGTTGGTGGATGATTTTCAGCAAATTGCCAAAAGTAAC 1104 41.85 GNFPTDCPFSISSLVGRRRSETFLLAFYLHLRFHFIATAFTSFGAGFTTVNFETYELKMVLISVVRDYINKMLQDISGMKVFILDSQTVSVVSVAYSQSELLQKEVFLVELVDTISMSRESMYHLKAVCFLRPTSENIQLLRRQLANSRFGEYHLFFSNILKETQIHILADSDEQDVVQQVVEFYGDFMAIDPYHFTLNMASNHIYMIPAVVDPPSLQHFCDRVVDGLAALFLALKQRPVIRYQRTSDVAKRIAQETSKLMYQQESGLFDFRRTEVSPLLLVIDRRDDPLTPLLNQWTYQAMVHELLGIQDNKVDLKSIGKSSKDHQEVVLSSEQDSFYKANMYNNFGEIGMNIKKLVDDFQQIAKSN 368
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 3163738 3166270 - Carg01584-RA Car15g00571 162408

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car15g00571 368 Pfam Sec1 family 80 365 IPR001619 GO:0016192
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car15g00571 K12479 VPS45; vacuolar protein sorting-associated protein 45 - csv:101203589 562.762
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Car04g02340 Car15g00571 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car15g00571 Car-Chr15:3163738 Car15g01296 Car-Chr15:10116871 9.55E-15 dispersed
Car15g00571 Car-Chr15:3163738 Car04g02340 Car-Chr4:18828990 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1219 . . . . . . . . Cmo04g02542 Cmo15g00629 . . . . Sed01g3642 . Cpe13g00665 Bhi04g01816 Tan11g1186 Cmetu03g0425 . Hepe02g2770 . Lcy10g1316 . . . . . . . . . Cone17ag0798 Cone20ag0397 . . . Cme03g00395 Blo17g00221 . . Bda13g01531 . Bpe14g00330 . Bma02g00280 . . . . . Car04g02340 Car15g00571 Cpe01g02102 . . . . . . . . . . . . . . . Lsi08g00525 . Chy03g00589 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007852 1 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 1 1 2 1 1 35
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car15g00571 Car_Chr15 FPKM 51.513439 58.087524 63.89426 66.649117 31.168686 28.424337 33.868134 59.664581 57.099907 69.442566