Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car15g00576 ATGCCTCGTCGCAGGGATGACGACGATGACGACGACATTGACGCCGATGAGGAAGAGTATGAGGAGGAGATGGAACAGCCTCTGGATGACGAGGATGAAGAGGAAGATCGTTCGAGTAGGAAGCGGCGGAGATCAAATTTTATAGATGACGCTGCGGAGGAGGATGAGGACGAGGAGGAAGAAGAAGAGGATGACGATGATGAAGATTTTGGTGGCGGTGGTCGGCGGCGGCGTGCCAAGAGGCCTAGCGGTTCTCAGTTTTTGGATATTGAGGCGGAGGTTGATAGCGATGACGATGAAGAGGACGACGATGGAGAGGACGATTTTATTGTTGATAATGGAGCTGATATACCCGATGAAGATGAAAATAGAAGGATGCATCGCCGCCCATTGCTACCACGGGAGGATGAACAGGAGGATGTTGAAGCACTTGAAAGAAGGATTCAAGCAAGATATGCAAGATCAAATCATATGGAATATGACGAGGAGACCACAGAAGTGGAGCAGCAAGCTCTCTTACCTTCTGTAAGGGATCCAAAATTGTGGATGGTTAGATGCGCGATTGGCCGAGAACGGGAGGCTGCTGTTTGTCTAATGCAAAAATGCATTGATAGAGGGCCTGAAATGCAAATAAGATCTGCAGTTGCTCTTGACCATTTGAAGAACTATATATATATTGAAGCTGACAAAGAGGCCCATGTTAGAGAGGCTTGTAAAGGTCTACGCAACATGTACGCACAAAAGATAACACTCGTTCCAATTAAAGAAATGACGGATGTTCTCTCTGTTGAAAGCAAAGCAATTGATCTTGCTAGAGATACATGGGTTAGGCTGAAGATTGGGACATATAAGGGGGATCTTGCCAAGGTGGTGGATGTTGACAATGTGCGGCAGAGGGTTACTGTGAAACTGATTCCACGGATAGACCTACAGGCTCTTGCAATTAAATTGGAAGGGAGAGAAGTTGCTAAAAAGAAGGCATTTGTTCCTCCACCGCGATTTATGAATATTGATGAAGCTAGAGAGTTGCACATCCGTGTGGAGCGCAGACGTGATCCCATTACTGGAGAATACTTTGAGAATATAGGTGGCATGTTTTTCAAGGATGGTTTCTTGTATAAAACAATGTCCATGAAGTCAATAAATGCCCAAAACATAAAGCCGACTTTTGATGAACTTGAAAAATTTCGAAAGCCTGGAGAAAATGGAGATGGGGATATTGCTAGTTTGTCTACGTTGTTTGCGAATCGAAAGAAAGGGCACTTTATGAAAGGTGATGCTGTCATTGTTGTTAAGGGGGATCTCAAGAATTTGAAAGGATGGGTTGAGAAAGTAGAGGAAGAGAATGTCCACATCAGACCAGAAATGAAGGGCCTTCCCAAAACACTTGCGGTGAATGAAAGAGAACTTTGCAAGTACTTCGAGCCTGGGAATCATGTAAAAGTTGTATCGGGCACTCAGGAGGGGGCTACTGGTATGGTTGTAAAGGTGGATCAACATGTGCTTATTATATTATCTGATACAACCAAGGAACATATTCGGGTATTTGCTGATGATGTTGTTGAGAGCTCCGAGGTAACAACTGGCGTGACTAGAATTGGGGATTATGAACTTCACGATCTTGTGTTATTGGATAATATGAGCTTTGGCGTAATTATCCGTGTAGAAAGTGAGGCTTTCCAGGTTCTTAAGGGTATTCCTGATAGACCTGAGGTTGATATTGTGAAGTTAAGGGAAATAAAAAGTAAGATTGACAAGAAAATCAGTGTTCAAGATCGGTTCAATAACACAATTTCCTCCAAAGACGTAGTGAGGATTCTTGAAGGACCTTGTAAGGGAAAACAAGGTCCAGTGGAGCACATATACAGAGGAATTCTGTTTGTTTATGATCGCCATCACTTGGAACATGCAGGCTTTATATGTGCTAAATCACAGGCTTGTGTTGTTGTGGGTGGATCCCGAACTAATGGAAATAGAAATGGTAAGTCATATTCTAGGTTTGCTGGCCTTGGGACCCCACCTCGTTTTCCTCAGTCACCTAAGAGATTTCCTAGAGGAGGCCCTCCCAATAATGGTGGGGGAAGACATAGAGGTGGGAGAGGGCATCATGATGGGTTGGTTGGATCAACAGTAAAAGTTCGGCTGGGTCCTTATAAGGGTTACCGTGGACGTGTTGTTGAAATAAAAGGCCAAATGGTTCGAGTAGAGCTCGAGTCTCAAATGAAAGTGGTCACAGTTGACCGCAATTTTATCTCAGATAATGTTGCTGTTTCGACCCCCCATCGTGAATCATCTAGATATGGTATGGGAAGTGAAACTCCCATGCATCCTTCTCGTACTCCCCTGCATCCATACATGACCCCAATGAGAGATATTGGAACAACACCAATTCATGATGGCATGAGGACACCTATGCGAGATCGAGCATGGAATCCCTATGCACCCATGAGTCCGTCAAGGTAA 2463 44.38 MPRRRDDDDDDDIDADEEEYEEEMEQPLDDEDEEEDRSSRKRRRSNFIDDAAEEDEDEEEEEEDDDDEDFGGGGRRRRAKRPSGSQFLDIEAEVDSDDDEEDDDGEDDFIVDNGADIPDEDENRRMHRRPLLPREDEQEDVEALERRIQARYARSNHMEYDEETTEVEQQALLPSVRDPKLWMVRCAIGREREAAVCLMQKCIDRGPEMQIRSAVALDHLKNYIYIEADKEAHVREACKGLRNMYAQKITLVPIKEMTDVLSVESKAIDLARDTWVRLKIGTYKGDLAKVVDVDNVRQRVTVKLIPRIDLQALAIKLEGREVAKKKAFVPPPRFMNIDEARELHIRVERRRDPITGEYFENIGGMFFKDGFLYKTMSMKSINAQNIKPTFDELEKFRKPGENGDGDIASLSTLFANRKKGHFMKGDAVIVVKGDLKNLKGWVEKVEEENVHIRPEMKGLPKTLAVNERELCKYFEPGNHVKVVSGTQEGATGMVVKVDQHVLIILSDTTKEHIRVFADDVVESSEVTTGVTRIGDYELHDLVLLDNMSFGVIIRVESEAFQVLKGIPDRPEVDIVKLREIKSKIDKKISVQDRFNNTISSKDVVRILEGPCKGKQGPVEHIYRGILFVYDRHHLEHAGFICAKSQACVVVGGSRTNGNRNGKSYSRFAGLGTPPRFPQSPKRFPRGGPPNNGGGRHRGGRGHHDGLVGSTVKVRLGPYKGYRGRVVEIKGQMVRVELESQMKVVTVDRNFISDNVAVSTPHRESSRYGMGSETPMHPSRTPLHPYMTPMRDIGTTPIHDGMRTPMRDRAWNPYAPMSPSR 820
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 3179698 3187355 - Carg01579-RA Car15g00576 162413

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car15g00576 820 MobiDBLite consensus disorder prediction 91 116 - -
Car15g00576 820 MobiDBLite consensus disorder prediction 9 33 - -
Car15g00576 820 MobiDBLite consensus disorder prediction 51 69 - -
Car15g00576 820 Pfam Early transcription elongation factor of RNA pol II, NGN section 180 261 IPR005100 -
Car15g00576 820 MobiDBLite consensus disorder prediction 117 141 - -
Car15g00576 820 Coils Coil 134 154 - -
Car15g00576 820 MobiDBLite consensus disorder prediction 761 783 - -
Car15g00576 820 MobiDBLite consensus disorder prediction 1 141 - -
Car15g00576 820 MobiDBLite consensus disorder prediction 797 820 - -
Car15g00576 820 MobiDBLite consensus disorder prediction 34 50 - -
Car15g00576 820 Pfam KOW motif 707 738 IPR005824 -
Car15g00576 820 Pfam KOW motif 476 503 IPR005824 -
Car15g00576 820 ProSitePatterns Ribosomal protein L24 signature. 425 442 IPR005825 GO:0003735|GO:0005840|GO:0006412
Car15g00576 820 MobiDBLite consensus disorder prediction 660 707 - -
Car15g00576 820 Pfam Spt5 transcription elongation factor, acidic N-terminal 87 174 IPR022581 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car15g00576 K15172 SUPT5H, SPT5; transcription elongation factor SPT5 - csv:101204562 1399.42
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Car04g02336 Car15g00576 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car04g02460 Car-Chr4:19563689 Car15g00576 Car-Chr15:3179698 3.12E-28 dispersed
Car15g00461 Car-Chr15:2452641 Car15g00576 Car-Chr15:3179698 1.02E-28 dispersed
Car15g00576 Car-Chr15:3179698 Car04g02336 Car-Chr4:18808583 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1207 Blo01g01326 . Bda01g00691 . Bpe02g00614 . . Bma01g02111 Cmo04g02539 Cmo15g00634 . . . . Sed01g2883 . Cpe13g00663 Bhi04g01823 Tan11g1195 Cmetu03g0776 . Hepe02g2759 . Lcy10g1309 Cla08g00661 Cam08g1091 Cec08g0676 Cco08g0785 Clacu08g0796 . Cre08g0599 . . . . . . . Cme03g00404 . . . . . . . . . . . . . Car04g02336 Car15g00576 Cpe01g02098 . . . . . . . . . . . . . . . Lsi08g00519 . Chy03g00585 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005509 1 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 2 1 1 1 1 2 3 1 39
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car15g00576 Car_Chr15 FPKM 5.554348 6.164466 46.751183 48.203392 33.545532 16.928993 28.69626 4.521678 3.737662 4.257581