Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car15g00580 ATGGCAACATCGGGGCCACCCACCCCTATGGGTGGCGGTGCACAGTCTGTTTCCCCCTCACTTCTGCGATCTAATTCTGGATTGATAGGAATTCAAGGTGGTCTGCAGCCTTCTCAGGCAGCCTTTTCTTCACTTGTATCGCCTCGCAATCAGTTCAATAATATGAATATGGTTGGTAATATGTCCAATGTGTCATCTCTCCTTAATCAATCATTTGGAAATGGGGCTCCTAATTCTGGACTTCCATGTCCTGGCAGTAGCCACACTGGTGCGGAGCCAGATCCCCTTTCCGGTGTTGGCAATGGAACGAGCTTTAATAATCCTTCATCGTCATTTGTAGCATCGAATATGACAAACCCTGTTTCGTCCGTTCAGGGGCATAATCCACAATTTTCTAACCTTTCTAGCAGTCAGATGTTATCAGATCAACAGCAGTCGCAACAGCTAGAGCCCCAGAACTTCCAACATAGTCAACAGTCGATGGAACAGTTTTCTGCACACCAGAGCAATCAACAACCACAATTTCATGCAATTCGAGGGTTGAATGGTGTTGGACCTGTAAAGTTGGAGCCTCAAGTGACCAGCAATGATCAACTTGGACAGCAGCAGCAGCAGCAGCATTTGCAAACGTTGAGAAACCTTGTTCCTGTGAAATTGGAATCACAACGACTTCAGTCACTGAGAGGTTTGACACCAGTTAAAATGGAACCCCAACAATCGGACCAGTCATTATTTCTGCAGCAGCAGCAGCAGCAGCATCAACTACAACAACCACAATCGCAACAATTTCTCCATATGTCTAGACAGCCCTCTCAGGCAGCGGCTGCCCAAATTAATCTAATGCACCAACAAAGGCTTTTGCAATTGCAACAACAACATCAGCAACAACATCTCTTAAAAAGTATGCCTCCTCAACGGCCACAATTGCAACAACATTATCAACAGCAGAACCTTTCTCTGAGATCTCCTGTAAAACCAGGATATGAACCTGGAATGTGTGCCCGGCGTCTGACTCATTACATGTATCACCAGCAACACAGACCTGAAGACAACAATATAGATTTCTGGAGGAAATTTGTTAACGAGTACTTTGCACCCCATGCCAAGAAGAAGTGGTGCGTTTCCATGTATGGAAGTGGGCGACAAACAACTGGAGTTTTCCCTCAGGATGTATGGCACTGTGAAATATGCAATCGCAAGCCTGGGCGTGGCTTTGAAGCAACTGCTGAAGTTCTTCCCAGACTTTTTAAGATCAAGTATGAAAGTGGTACAATGGAGGAACTACTGTACCTTGACATGCCTCGTGAATATCATAATGCATCTGGTCAGATTGTCCTGGATTATGCAAAAGCGATACAGGAAAGTGTTTTTGAGCAACTTCGTGTTGTTCGCGATGGCCAACTTCGAATTGTTTTTTCTCCGGACCTTAAGATATGCTCATGGGAATTCTGTGCTCGACGCCATGAGGAACTTATACCTAGGAGATTATTGATACCTCAGGTTAGCCACCTTGGAGCGGCAGCTCAAAAGTACCAGTCTGCCATTCAAAACGCATCATCCAATTTATCAACTCCTGAATTGCAAAACAATTGTAACATGTTTGTGGCTTCAGCACGACAATTAGCTAAAGCCTTGGAAGTTCCGCTGGTAAATGACTTGGGATATACAAAGAGATACGTACGTTGTCTACAGATATCCGAAGTGGTTAATAGCATGAAGGACTTGATTGATTACAGCAAAGAAGCAAGGATTGGGCCAATGGATAGTCTAGCCAAGTTTCCTCGGAGGACTAGTTCATCATCAGTGCTTACAAATCATGCTCAAGTTTCTAATGAGCAGCAACAACAGCAATCATCCATAGCCCATCACTCAAATAACAACCAGGGTTCTGTCCAGGCTTCTGCAGTGCAGCTTACGGGTAGCAATGGCGTGGCCAGTGTAAATAACATGGCCAACCAACCCTCAACATCAAACTCAGCGAGCACCATTGCTGGGCTTCTTCACCAGAATTCTATTAATTCCAGACAGCAGAACTCTATGGCTGATGCTAGCAACTCATATGGGGGAAGTTCTGTTCAGATTCCATCTCCTGGTTCTTCCAGTACAATTCCACCTACGCAACTGAACCCTTCTACATTCCAGCCACCGACACCTTCATCATCTAACAATCTTTCACAACCATCGCATGCAGCTGTGAGGAATGGCAATCAGATGAGTGCTGCTAATTCTCCGGCAAATGTCTCTATACAACAACCTGCCTTATCTGGAGATGCTGATCCTGGTGATACACAGTCCTCCGTGCAAAAGATCTTACAAGAGATGATGATGAATAATCAAATGAATAGTCCGACAAGTCTGGTTGGTGTTGGTTCGGTGGTCAATGATATGAAAAACGTGAATGGGGTCTTACCTACAAGTAATCCAGGTCTCAACAACGGGAATTGTATTGGGGGAAACGGAGCAACCAACAGTGGCTCAGGAATGGGAGGAGGTGGATATGGATCAATGGGGAGTGGGCTTGGTCAGCCTGCCATGGTTAATGGAATGAGAACTGCAATGGGAAATAACTCCATTATGAACAGACGAATAGGAATGGCATCGCTCGCTCTTGAACAAAGCATGAATGGTCAACAACCGCAGGATATGGGAAACCAGCTTCTTAGTGGACTAGGAGCTGTGAATGGTTTTAGTAATCTCCAATTCGACTGGAAGCCGTCCCCATGA 2724 45.26 MATSGPPTPMGGGAQSVSPSLLRSNSGLIGIQGGLQPSQAAFSSLVSPRNQFNNMNMVGNMSNVSSLLNQSFGNGAPNSGLPCPGSSHTGAEPDPLSGVGNGTSFNNPSSSFVASNMTNPVSSVQGHNPQFSNLSSSQMLSDQQQSQQLEPQNFQHSQQSMEQFSAHQSNQQPQFHAIRGLNGVGPVKLEPQVTSNDQLGQQQQQQHLQTLRNLVPVKLESQRLQSLRGLTPVKMEPQQSDQSLFLQQQQQQHQLQQPQSQQFLHMSRQPSQAAAAQINLMHQQRLLQLQQQHQQQHLLKSMPPQRPQLQQHYQQQNLSLRSPVKPGYEPGMCARRLTHYMYHQQHRPEDNNIDFWRKFVNEYFAPHAKKKWCVSMYGSGRQTTGVFPQDVWHCEICNRKPGRGFEATAEVLPRLFKIKYESGTMEELLYLDMPREYHNASGQIVLDYAKAIQESVFEQLRVVRDGQLRIVFSPDLKICSWEFCARRHEELIPRRLLIPQVSHLGAAAQKYQSAIQNASSNLSTPELQNNCNMFVASARQLAKALEVPLVNDLGYTKRYVRCLQISEVVNSMKDLIDYSKEARIGPMDSLAKFPRRTSSSSVLTNHAQVSNEQQQQQSSIAHHSNNNQGSVQASAVQLTGSNGVASVNNMANQPSTSNSASTIAGLLHQNSINSRQQNSMADASNSYGGSSVQIPSPGSSSTIPPTQLNPSTFQPPTPSSSNNLSQPSHAAVRNGNQMSAANSPANVSIQQPALSGDADPGDTQSSVQKILQEMMMNNQMNSPTSLVGVGSVVNDMKNVNGVLPTSNPGLNNGNCIGGNGATNSGSGMGGGGYGSMGSGLGQPAMVNGMRTAMGNNSIMNRRIGMASLALEQSMNGQQPQDMGNQLLSGLGAVNGFSNLQFDWKPSP 907
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 3208516 3215066 + Carg01575-RA Car15g00580 162417
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car15g00580 907 MobiDBLite consensus disorder prediction 589 631 - -
Car15g00580 907 MobiDBLite consensus disorder prediction 99 172 - -
Car15g00580 907 MobiDBLite consensus disorder prediction 593 631 - -
Car15g00580 907 MobiDBLite consensus disorder prediction 1 21 - -
Car15g00580 907 MobiDBLite consensus disorder prediction 675 730 - -
Car15g00580 907 Pfam LIM-domain binding protein 336 590 IPR029005 -
Car15g00580 907 MobiDBLite consensus disorder prediction 78 172 - -
Car15g00580 907 MobiDBLite consensus disorder prediction 235 270 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Car04g02333 Car15g00580 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car15g00580 Car-Chr15:3208516 Car15g01273 Car-Chr15:9945714 1.52E-114 dispersed
Car01g00900 Car-Chr1:8492680 Car15g00580 Car-Chr15:3208516 0 wgd
Car15g00580 Car-Chr15:3208516 Car04g02333 Car-Chr4:18779618 0 wgd
Car15g00580 Car-Chr15:3208516 Car09g00969 Car-Chr9:6082539 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car15g00580 - - csv:101218018 1425.99