Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car15g00585 ATGGTGAACGATACTGAGTATTACGACATTCTCGGTGTTCGTCCTTCTGCTTCCGAGGACGAGATTCGTAAGGCCTATTATCTTAAGGCGAAACAAGTCCATCCGGATAAGAATTTGAATGATCCTCAAGCTGCTGAAAGGTTTCAGGTGTTAGGTGAAGCCTATCAAGTTTTGAGTGATGCAGTCCAAAGAGATGCATATGATAGGAATGGGAAGCACAGTATTACTAGGGAATCCATGCTTGACCCTACTGCTGTCTTTGCACTTCTATTTGGAAGTGAATTGTTTGAGGACTATATTGGACATTTAGCCGTAGCATCAATGGCTTCATCTGAATTAGAGACCGAAACTGGTAATTCAGAGAGATTACAAGATAAGTTGAAGGCTGTCCAGAAAGAAAGAGAAGAAAAACTTGCACGCATACTTGAGGGTTTTCTTAATCAATATGTTCAAGGTGACAAAGACGGATTCTTACGGCATGCTGAATCTGAAGCCAAAAGACTCTCTAATGCGGCTTTTGGTATCAGTATACTACACACGATAGGCTACATTTATTCAAGACAAGCAGCACAGGAGCTTGGAAAGAGAGCCATTTATCTTGGCGTGCCATTTGTGGCTGAATGGTTTCGCAACAAGGGGCATTTTTGGAAGTCACAGATAACAGCTGCAAAAGGTGCTTTTCAGTTGTTACAGCTTCAAGATGATATTTGCCGGCAGTATAAAATGGATGGTAGTGGCCCTGAAAATGATATTGAATCGCATATTAGATCGAATAAAGACACATTCCTCAATTCTTTGTGGAAGCTTAACGTGGTGGACATAGAACTGACTCTTATAAATGTGTGCCAGATGGTACTACGGGATAATACTGTGAAAAGGGAAGAACTAAAAGCTCGTGCTCTGGCTCTAAAGATTCTTGGAAATATATTCCAGCAGGAGAAGCAAGCACAAAATGGTGGAACATCAAGAAAGAAAAGTGCTGCTGCAGTAGATGACGATGGAACGACTTCAGAGAGCAGCGACGATGAGGATGATCCCCGAAGACCACTATCTTATCGAACTCCTTTTCTTACTCAGGCAAGTTAA 1086 41.8 MVNDTEYYDILGVRPSASEDEIRKAYYLKAKQVHPDKNLNDPQAAERFQVLGEAYQVLSDAVQRDAYDRNGKHSITRESMLDPTAVFALLFGSELFEDYIGHLAVASMASSELETETGNSERLQDKLKAVQKEREEKLARILEGFLNQYVQGDKDGFLRHAESEAKRLSNAAFGISILHTIGYIYSRQAAQELGKRAIYLGVPFVAEWFRNKGHFWKSQITAAKGAFQLLQLQDDICRQYKMDGSGPENDIESHIRSNKDTFLNSLWKLNVVDIELTLINVCQMVLRDNTVKREELKARALALKILGNIFQQEKQAQNGGTSRKKSAAAVDDDGTTSESSDDEDDPRRPLSYRTPFLTQAS 361
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 3230268 3233138 + Carg01570-RA Car15g00585 162422

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car15g00585 361 Pfam X-domain of DnaJ-containing 131 322 IPR026894 -
Car15g00585 361 Coils Coil 113 140 - -
Car15g00585 361 Pfam DnaJ domain 6 68 IPR001623 -
Car15g00585 361 ProSiteProfiles dnaJ domain profile. 6 71 IPR001623 -
Car15g00585 361 MobiDBLite consensus disorder prediction 314 361 - -
Car15g00585 361 ProSitePatterns Nt-dnaJ domain signature. 48 67 IPR018253 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car15g00585 - - - csv:101219818 636.336
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Car04g02328 Car15g00585 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car09g00005 Car-Chr9:17533 Car15g00585 Car-Chr15:3230268 1.36E-150 dispersed
Car15g00585 Car-Chr15:3230268 Car20g00716 Car-Chr20:4139429 5.27E-120 dispersed
Car15g00585 Car-Chr15:3230268 Car04g02328 Car-Chr4:18760396 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1178 . Blo12g00834 . Bda03g00342 . Bpe04g00302 . . Cmo04g02530 Cmo15g00644 . . . . . . Cpe13g00655 Bhi04g01834 . . . . . . . . . . . . . . . Cone17ag0805 Cone20ag0410 . . . Cme03g00430 . Blo18g00226 . Bda01g01383 Bpe02g01596 . Bma01g00878 . . . . . . Car04g02328 Car15g00585 Cpe01g02091 . . . . . . . . . . . . . . . . . Chy03g00571 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002184 1 3 2 3 3 1 3 1 0 2 1 2 2 1 2 3 0 3 2 1 2 2 2 2 1 3 2 4 2 2 58
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car15g00585 Car_Chr15 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0