Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car15g00587 ATGGGTGTGTCTGCGGCCTCAATACTCAATCGCCTTCTTTCCCATAAGAACCTCAGCGCCAGAACCCAACCCACCGGCGCCAAAGCCGCTGCCACCACAGTCCTCAAATACCTGGAAGAGGGTCGCCTCCGAAAAGCTGTCTCGGTTCTGTTTAACTCCCCCTTCCCCTTTCCTCATCCTTTGTATGCTCGCCTCTTCCAAATTTGTTCTTCCACTCGCGCTCTTGTTGAAGCTCGAAAGGTTGAATCTCATTTGGTTACGTTTTGCCCCACGCCGCCGATTTTCTTGTTGAATCGGGCGATTGAGGCGTATGGTAAATGTGGGTGTTTGGAGGATGCGAGGGAGCTGTTCGAGGAAATGCCTCAGAGAGATGGGGGATCTTGGAATGCGATGTTAACGGCGTATACGCAGAATGGGTTTGCTTTGGAATCTTTGAATTTATTTCTGAATATGAATAAATCCGGTGTTTATGCTACTGAAATAACTTTAGCTAGTGTACTTGGGTCTTGCGGTTCTGTTTTGGCTCTTCACCTCTCTAGGCAAGTTCACGGGCATATTGTGAAATCTGGCTTTGTTGGCAATGTGATTCTCGAGAGCTCGCTTGTTGATGTCTATGGAAAGTGTAGGCTTATGAATGATGCACGTAGCATGTTTGATGAAATCCAGAATCGAAATGATGTTTCCTGGAATGTTATTGTTAGGCGCTATCTTGAGGTGGGCGATGGTAAAATGGCAGTGTCAATGTTTTTCCAAATGTTCCGAGAGGCAGTGATGCCATTGAGTTTTACTTTTTCCAATGCTCTGATTGCTTGTTCAAGTATGGCAGCACTCATAGAAGGTAGGCAAATTCATGGTATTGTAGTGAAAGTAGGTTTGGAAGAGGATGAAGTTATTTCGAGCTCTTTAATTGACATGTATGTGAAATGTGGAACATTAGACAATGCTCACCAAGTATTTACCCAACCCAGTTCCAGAAATCTTATTTCTTGGACTTCCATGGTATATGGATATGCAATGTCTGGGGAAGTTCTAAAAGCTAGGGAGCTTTTCAATGAAATGCCCGAACGCAATGTGATTTCGTGGAATGCTATGTTGGCAGGGTATATTCATTCCGGTCAATGGAAAGAGGCACTCGACTTTGTCCACTTGATGCACAATTCGATTAAGGATGTCGATCACGTTACTCTTCGCCTGATATTGAATGTGTGTACTGGCCTTTTAGATGTTGAAAGAGGAAAGCAAGTTCATGGTTTTATCTATAGAATTGGTTTCTATGCTAATCTCTATATTGGTAATGCCCTCCTTGACATGTATGGTAAATGTGGGAACTTGAAAAGTGCCCGAGTTTGGTTCTACCAAATGAGTCAATGGCGGGATAAAGTCTCCTGGAATGCTCTACTCACTACCTATGCTCGTCACGGCATGAGTGAACAGGCTATGACAATTTTCTCAGAGATGCAATGGGAAGCAGCTCCTAGTAAATTTACCTTTGCAACCCTTTTAGCAGCCTGCGCAAACACCTTTGCATTAGATCAAGGCAAACAAATCCATGGCTTCATGGTTAGAAATAATTATGAGATAGACGTTGCAGTTAGTGGAGCTTTAGTTGATATGTACTGTAAATGCCGACAACTTGAGTACGCTCTCAAGGTTTTTGAAAATGCAGCTTCGCGCGATGTGGTTCTGTGGAACTCCATAATTTTAGGATGTTGTCACAACAGAAGGGGTATGATAGTAATCGAATTGTTTGAAATGATGATGATGGAGAAAGGCATTAACCCGGACCATGTGACCTTCCAAGGTATTTTGCTTGCTTGTGTCTATGAAAATCTCGTTGAGTTAGGTAGGCAGTATTTCGATTCAATGATTGACAAGTTCTGTATCATACCTCGATTAGAGCACTATGAATGTGTGATCGAGCTCTATGGCCGACATGGAAACATGGATGAGCTCGAAAAATTTATCAACAATATGCCCTTTGATCCTACTGTTCCAATGCTAGAAAAAGTCCTTGATGCATGTAGAAAACACGGACACTCGAGGTTGGGAGAATGGGTAGCTATTAGACTAAATGAGCAGAATCTTTACAAGATCAAGTGTTCGCTCCAGCCTATTGAAAAGCAATGCATGTTCAAGAGCTCTGTGAGAAGAATCCAGGATCTCAATCTACCCAACATGTTGACTGTCACAATCCCCATCAAATGCTTGAAAGGTATATTTAGATTTGGTGATGTCAAAGGTGCACGCCATCAGGTAATGCCTGAGAAGGACATTATTTCTTGGAACTCTACGATTTCTGGTTCTGTTTCATCTGGATTTGCTAATAATGCTATGGACGTTTTTCTGGAAATGAAAAACGCTGGTTTTAGACCAACTAAATATACCTTCTCCATTTTGCTTCCAGTGTCGTATGCTTGTCATGGTAAGCAATTTCTTGGCAGTATGGTTCGAAGTGGTGTGGATGTGTCAAGTGTGGTGCTCAGAAATTCATTGATTGATATGCAACCAGGTTTAAGAGTATTGGCACTATATCAGTTCTCTCTAGTAGCACTCTCCCGATCAGTTCACTGTATTAATCATGCTAAACTTGGATTAACTGATAATGCCATTATAGTCTTCATAGATATACCTGTTAGAGGTTTGATATCATGGAACACTATGATTATGGTTCTGGTTAACAATGTGTACTTTGAAGCCTTACGCACTTTTAATAAGTTGGTCAGGGAAGGTGTACTGCCAGATAGGATAACTCTAGCTGGAGCCTCATTAGCTTGCAGTCATGCTGGTTTTGTTGAGGAAGGGATAGCCACCTTCTTTTCAATGGCATATGAACATGGAGGCGTGCCGAGGAATGAACATTGTTCTTTTGTAGTGAACTTGCTGAGTTGGGCTGGTAAATTTGAAGCAGTTAATATTATTAAAACACCAAAATGCCAACCTACTTCTACATTTTGCAATTCACTTCTTGGTGTCTGTGCAATTCATGGAGACCGAAAAGTTGTTGAAAGAGTTGCAGAGAGGGTGATGAAGCTGGAACTGCAATCATCCTTACTGTATTCGGTGCAGGCTCAAGCATTTGCAATGAGAGGAATCCTTCACAGAGTGCCTCATCCGGTGGGATACCAATTGAAAGCATTCCCAAGGTCGTTTGCTGGAACTAACTTTCGTGCAATGGAGGATGGAGTTTGGAAGAAAGCTGAAGCAGTGTGGAGAGATATGTGA 3222 42.36 MGVSAASILNRLLSHKNLSARTQPTGAKAAATTVLKYLEEGRLRKAVSVLFNSPFPFPHPLYARLFQICSSTRALVEARKVESHLVTFCPTPPIFLLNRAIEAYGKCGCLEDARELFEEMPQRDGGSWNAMLTAYTQNGFALESLNLFLNMNKSGVYATEITLASVLGSCGSVLALHLSRQVHGHIVKSGFVGNVILESSLVDVYGKCRLMNDARSMFDEIQNRNDVSWNVIVRRYLEVGDGKMAVSMFFQMFREAVMPLSFTFSNALIACSSMAALIEGRQIHGIVVKVGLEEDEVISSSLIDMYVKCGTLDNAHQVFTQPSSRNLISWTSMVYGYAMSGEVLKARELFNEMPERNVISWNAMLAGYIHSGQWKEALDFVHLMHNSIKDVDHVTLRLILNVCTGLLDVERGKQVHGFIYRIGFYANLYIGNALLDMYGKCGNLKSARVWFYQMSQWRDKVSWNALLTTYARHGMSEQAMTIFSEMQWEAAPSKFTFATLLAACANTFALDQGKQIHGFMVRNNYEIDVAVSGALVDMYCKCRQLEYALKVFENAASRDVVLWNSIILGCCHNRRGMIVIELFEMMMMEKGINPDHVTFQGILLACVYENLVELGRQYFDSMIDKFCIIPRLEHYECVIELYGRHGNMDELEKFINNMPFDPTVPMLEKVLDACRKHGHSRLGEWVAIRLNEQNLYKIKCSLQPIEKQCMFKSSVRRIQDLNLPNMLTVTIPIKCLKGIFRFGDVKGARHQVMPEKDIISWNSTISGSVSSGFANNAMDVFLEMKNAGFRPTKYTFSILLPVSYACHGKQFLGSMVRSGVDVSSVVLRNSLIDMQPGLRVLALYQFSLVALSRSVHCINHAKLGLTDNAIIVFIDIPVRGLISWNTMIMVLVNNVYFEALRTFNKLVREGVLPDRITLAGASLACSHAGFVEEGIATFFSMAYEHGGVPRNEHCSFVVNLLSWAGKFEAVNIIKTPKCQPTSTFCNSLLGVCAIHGDRKVVERVAERVMKLELQSSLLYSVQAQAFAMRGILHRVPHPVGYQLKAFPRSFAGTNFRAMEDGVWKKAEAVWRDM 1073
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 3241138 3246169 - Carg01568-RA Car15g00587 162424

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car15g00587 1073 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 459 493 IPR002885 -
Car15g00587 1073 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 326 360 IPR002885 -
Car15g00587 1073 Pfam PPR repeat 432 455 IPR002885 -
Car15g00587 1073 Pfam PPR repeat 359 385 IPR002885 -
Car15g00587 1073 Pfam PPR repeat 534 553 IPR002885 -
Car15g00587 1073 Pfam PPR repeat 199 225 IPR002885 -
Car15g00587 1073 Pfam PPR repeat 100 123 IPR002885 -
Car15g00587 1073 Pfam PPR repeat 127 156 IPR002885 -
Car15g00587 1073 Pfam PPR repeat 328 358 IPR002885 -
Car15g00587 1073 Pfam PPR repeat 227 254 IPR002885 -
Car15g00587 1073 Pfam PPR repeat family 558 606 IPR002885 -
Car15g00587 1073 Pfam PPR repeat family 756 800 IPR002885 -
Car15g00587 1073 Pfam PPR repeat family 459 506 IPR002885 -
Car15g00587 1073 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 124 158 IPR002885 -
Car15g00587 1073 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 559 594 IPR002885 -
Car15g00587 1073 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 225 259 IPR002885 -
Car15g00587 1073 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 93 123 IPR002885 -
Car15g00587 1073 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 757 791 IPR002885 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car15g00587 - - - csv:101210115 1232.62
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car15g00587 Car-Chr15:3241138 Car03g00097 Car-Chr3:1249552 4.59E-38 dispersed
Car15g00587 Car-Chr15:3241138 Car08g00306 Car-Chr8:1962062 1.23E-66 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1172 . . . . Bpe02g00620 . . Bma01g02099 . Cmo15g00648 . . . . . . . . . . . . . . Cla08g00647 . . . . . . Cone4ag1444 . . . . . . . . . . . . . . . . . . Cma12g00384 . . Car15g00587 Cpe11g00286 . . . . . . . . . . . . . . . Lsi08g01280 . Chy03g00560 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012345 1 1 1 1 0 1 1 1 1 1 1 1 1 0 1 2 1 1 1 1 1 1 1 1 2 0 1 1 1 1 29
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car15g00587 Car_Chr15 FPKM 1.725675 2.980662 2.044521 1.795774 0.511989 0.56812 0.256045 5.434923 3.996796 5.525236