Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car15g00588 ATGGGAAACCCTATCCATACAGCCGAAGACTGCATCATTTTCAGGGGCTGGGACAGTGCCGCCGGGGACGATGACTCTCAATCGGAGTCCGGCGTTTGTTCGCCCACGCTCTGGGGTTCTAATTCTCGAACCAACCTTCAATTTCACCGCCCGCGTAATCGCAGCCTCTCGCCGACGTCTCGGACACAAGCTATAGCCAGAGGGCAACAGGAGCTCATGGAGATGGTCAGGAACATGCCGGAATCCTCCTACGAGCTATCTCTTAAGGATCTTGTTGAACACCATTTGAGTAATTCGGAGCGGCAAGACGGCGATGCCTCGCTTTCGCGAGACGATTCCGCCTCTGAAACTTCCTTCCGAAGGGACACCAGCAAGACGAGGAGTGAAACTAGGGCGTTGGTTACCAGGAGTAGAAGCGTCGATAGCGGTGGATTTTACCTAAAAATGTTCCTCCCGCTGCCTTTCGGGCAGATGTCGGCCAAAAAGAAGAGGAATCTTAGAACCGATTCGGGGTTGAATAGCAGTTCGAGAGTGTCGCCTAAACCGCCGCCGGTGGACAGAGAGTGGTGGAGGAAGCGATCGAATGAGGGGAGCGTATCCGGCGGCAGTAGTAATAGCACTAGCAGCGAAAGAAGCAGGAATTCAGAATCGCAAGGAGGTTGCTGGTTTTGTATCAGTCCAATGAGGAGTAAAGATCCAGAACCCGACCCATCGGCCCAATTAGTGTTTCGGGTTGACGTACTCAGCAAGTCTACTGCGCCATCGATGCGGTTAGATTGGCAAGCCAAGTGGGACCAGATGGTCTGTGGTCTTAGTCCAGCACGAAAACGCGGTTCTACGCTCCAAAACGCATCAGCCACTCCCCAAAGAGATTCAAGGACAGAACACCCTATTGGGGTGCAAAAGATTCAGAGAGATATGTCTACCAATGCTGCTGCTGCTGCTTGCGCTGAGAGAGCCACAAATGATGAGCTTATAGCTCCTGATTGGGCCATAAACATTGAGCTCTGTGATATTATTAACATGGATCCCAGGCAAGCGAAGGATGCATTGAAGATACTCAAGAAGCGCCTGGCTAGCAAAAATCCTAAAACACAACTTCTAGCTCTCTATGCATTGGATGCTCTAAGCCAAAATTGTGGCGATACCGTTTTTAAGCTGATCGTAGATCGTAATATCCTGCACGAAATGGTTAAAATTGTAAAAAAGAAGCAGCCTGATTCGAATGTACGGGACAAGATATTAACTTTGGTAGATGCATGGCAAGCAACATTTGGGGGTGGCTCCAAGGGAAATGTGTTGGGAAATCTTTTTGCAGTACTCATTTGTTTTCGTTTCGTAATACAGAATGCTGGATTTCGATTTCCACCAAGACGAGAGAACGTTGGGCAGTTCGTAAGTCCACCTCAGATACACCCTGTTATTGAGCAACATGTTTCACCCTATGATGATCTTGCTGCTCAGGTTTCTCTTCAGTCTGATGCTTCTGGTTTAAGCTTGCCAGAAATTCATAATGCACAGGGGCTAGCAGATGTTTTGTTGGAAGTGCTCGACGCGTTGGATTCGAAGACTCCAGAGGCTTTGAAGCAAGAAGTTATTGTCGATCTTGTTGATCAATGCCGTTCCTACCAGAGCCGTGTCGTGATACTTGTGAATGAGTCAACAGATGAGGAACTGTTATGTCAAGGATTGGTGTTGAATGACAGTCTGCAGCGTGTACTCAGCTACCATGATGACATTGCAAAAGGAACGTTTACAACGGAAGCTAGAAGAACAGAGCCTCCTCCCGTTCCATCGGTTCCATATATGGACCCCGAGGAGGATGAGTCGGAAGATGATTTTACACCATTAGCTCGCAGGTCAACAAGAGATCACATTTATGCAAGGGACAGGAAACTGGCGAACGGTCAATCATCTCGAGTAAGTCCGCTTCCTTCACCCTCATTAAAGAAGACGACTGGTGCAGAAATGATCGATCATCTTAGCGGCGATGTGTACAAGCGTGAAGGGTCTCCAAGGACAGTAGAGCCACCATCTTATACAGCTTCAACTTCCCCACCTTCACCAACAACTTCATCTTCCTCACCTTTCTACACCAGACAGCCTTTATTCGTCGAGCCACCCCCAAGAAGCATGTCCACAAATCCGCCCTCCGCAACACCAAGCTCCCTCCCTCCCCCACCCTCAAGATATAATCAAAGACAACAATATTTTGAGCAACAAAAAGCTGTTACAGGAGGCACTTCGCCCCATTTGAGCAATGGCTATAATTCTTATGACAAGATAGTCGGGAATACCAAGAATCTGTCGCTCGGTCCTTCCACCCCGATGAGAGCTGCAGAGCATGAGGAGGCCCTTTTCAAAGATCTGATGGATTTTTCCAAGGCCAACACATCTTCATCCTCCAAATCCAACCGACCATTCTGA 2427 48.54 MGNPIHTAEDCIIFRGWDSAAGDDDSQSESGVCSPTLWGSNSRTNLQFHRPRNRSLSPTSRTQAIARGQQELMEMVRNMPESSYELSLKDLVEHHLSNSERQDGDASLSRDDSASETSFRRDTSKTRSETRALVTRSRSVDSGGFYLKMFLPLPFGQMSAKKKRNLRTDSGLNSSSRVSPKPPPVDREWWRKRSNEGSVSGGSSNSTSSERSRNSESQGGCWFCISPMRSKDPEPDPSAQLVFRVDVLSKSTAPSMRLDWQAKWDQMVCGLSPARKRGSTLQNASATPQRDSRTEHPIGVQKIQRDMSTNAAAAACAERATNDELIAPDWAINIELCDIINMDPRQAKDALKILKKRLASKNPKTQLLALYALDALSQNCGDTVFKLIVDRNILHEMVKIVKKKQPDSNVRDKILTLVDAWQATFGGGSKGNVLGNLFAVLICFRFVIQNAGFRFPPRRENVGQFVSPPQIHPVIEQHVSPYDDLAAQVSLQSDASGLSLPEIHNAQGLADVLLEVLDALDSKTPEALKQEVIVDLVDQCRSYQSRVVILVNESTDEELLCQGLVLNDSLQRVLSYHDDIAKGTFTTEARRTEPPPVPSVPYMDPEEDESEDDFTPLARRSTRDHIYARDRKLANGQSSRVSPLPSPSLKKTTGAEMIDHLSGDVYKREGSPRTVEPPSYTASTSPPSPTTSSSSPFYTRQPLFVEPPPRSMSTNPPSATPSSLPPPPSRYNQRQQYFEQQKAVTGGTSPHLSNGYNSYDKIVGNTKNLSLGPSTPMRAAEHEEALFKDLMDFSKANTSSSSKSNRPF 808
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 3249740 3255948 + Carg01567-RA Car15g00588 162425

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car15g00588 808 ProSiteProfiles GAT domain profile. 494 582 IPR004152 GO:0035091|GO:0043130
Car15g00588 808 MobiDBLite consensus disorder prediction 276 294 - -
Car15g00588 808 MobiDBLite consensus disorder prediction 98 135 - -
Car15g00588 808 MobiDBLite consensus disorder prediction 676 700 - -
Car15g00588 808 MobiDBLite consensus disorder prediction 22 62 - -
Car15g00588 808 MobiDBLite consensus disorder prediction 709 728 - -
Car15g00588 808 MobiDBLite consensus disorder prediction 585 759 - -
Car15g00588 808 MobiDBLite consensus disorder prediction 196 218 - -
Car15g00588 808 MobiDBLite consensus disorder prediction 23 62 - -
Car15g00588 808 Pfam VHS domain 316 425 IPR002014 GO:0035091|GO:0043130
Car15g00588 808 MobiDBLite consensus disorder prediction 729 759 - -
Car15g00588 808 MobiDBLite consensus disorder prediction 613 631 - -
Car15g00588 808 MobiDBLite consensus disorder prediction 98 134 - -
Car15g00588 808 MobiDBLite consensus disorder prediction 275 295 - -
Car15g00588 808 Pfam GAT domain 509 583 IPR004152 GO:0035091|GO:0043130
Car15g00588 808 MobiDBLite consensus disorder prediction 162 218 - -
Car15g00588 808 ProSiteProfiles VHS domain profile. 320 456 IPR002014 GO:0035091|GO:0043130
Car15g00588 808 MobiDBLite consensus disorder prediction 635 649 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car15g00588 - - - csv:101219096 688.723
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Car04g02322 Car15g00588 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car12g00245 Car-Chr12:1643973 Car15g00588 Car-Chr15:3249740 1.67E-68 dispersed
Car15g00588 Car-Chr15:3249740 Car05g00543 Car-Chr5:3174810 5.52E-68 dispersed
Car04g02323 Car-Chr4:18738830 Car15g00588 Car-Chr15:3249740 2.30E-107 transposed
Car01g00907 Car-Chr1:8570670 Car15g00588 Car-Chr15:3249740 1.37E-133 wgd
Car15g00588 Car-Chr15:3249740 Car04g02322 Car-Chr4:18733567 0 wgd
Car15g00588 Car-Chr15:3249740 Car09g00962 Car-Chr9:6000524 4.17E-151 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g185 Blo01g01314 Blo12g01115 Bda01g00684 . Bpe02g00621 Bpe04g00015 Bma04g00022 Bma01g02098 . Cmo15g00650 . . . . . . . Bhi04g01843 Tan11g1214 . . . . . Cla08g00646 Cam08g1070 Cec08g0655 Cco08g0766 Clacu08g0775 . Cre08g0583 Cone4ag1441 . Cone17ag0809 Cone20ag0414 . Csa04g01732 . Cme03g00439 . . . . . . . . . . . . . Car04g02322 Car15g00588 Cpe01g02087 Cpe02g00872 . . . . . . . . . . . . . . Lsi08g00505 . Chy03g00557 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001242 1 5 2 2 2 2 4 2 2 3 2 2 4 2 2 4 2 4 4 2 2 2 1 2 2 3 2 5 3 1 76
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car15g00588 Car_Chr15 FPKM 1.659249 3.090793 4.834712 4.270023 30.662682 30.58783 30.454292 3.052813 2.579345 2.93099