Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car15g00590 ATGGATTCAAGCAGCCCATTGTTGGTCCTCTCCTCTCAGTTCATATGGCCTAAAGAGGATTTAGTAGACGCATATGATGAGAAGCTCAGTGAGCCACACGTCGACCTTCACGGCTTCCTTAAGGGCGATCAAAAGGCCACCATCGAAGCTTCCCACCTCGTAAGGACAGCCTGCATGAAACATGGCTTCTTCCAAGTTATCAACCATGGCGTGGATCAAACCCTGTTAGCCACCGCCCTTGACAAAATGGGCCCTCTTTTTAACCTCCCTTTCCACCTTAAAACCACGGCCTCTGCCAAAATGTGGGGCTTTTCCACTGCCCATTCTAATCGCTTTTCCTCAAAGCTGCCTTGGAAGGAAACTTTCTCCTTTGGGTTTGACCATTGCAAAACCTCCAATAATGAACCCCTTGTGGTGGATTTCTTCTCTTCCATCTTAGGCCACGAATTTCAAGAAATAGGGGCTTTATATGAGAAGTATTGCGAGGCCATGAGGGACTTGGGGCTTGCATTAACGGAGCTTTTGGGCATAAGTTTGGGCGTGGAGAGGTCACATTTTCGCAAGTTTTTTGAGGATGGAAGCTCCATAATGCGATTGAATAGCTACCCAATATGCGAACAAGGCAGCGTGGCCCTTGGCACAGGGCCTCATTGTGATCCAACAGGCTTGACCATCCTCCACCAGGACCAGGTCGGTGGCCTTGAAGTCTTCGCCGACAACAAATGGCACACCGTTCCCCCATCTCAAAATGCACTCGTTATTAACGTTGGTGACATCTTCATGGCACTTTGTAATGGGGAATACAAAAGCTGCGTGCACCGGGCGTTGGTGAACAAACACAAGGAGAGGAGGTCGTTGGCATTTTTCCTTTGTCCGAGGAAAGACAAGGTGGTGAGGCCGCCGGAGACACTTGTTGTCGGCGGTGGGTCGAGAAAGTACCCGGATTTTGCCTGGTCGGAGCTGCTTGAATTCACTCAGAAATATTACAGAGCCGATGCTGTAACTCTTCAGAACTTTACCAAATGGGTCGTGTCGGCGAGGCCATGTGATGTTTAG 1056 49.53 MDSSSPLLVLSSQFIWPKEDLVDAYDEKLSEPHVDLHGFLKGDQKATIEASHLVRTACMKHGFFQVINHGVDQTLLATALDKMGPLFNLPFHLKTTASAKMWGFSTAHSNRFSSKLPWKETFSFGFDHCKTSNNEPLVVDFFSSILGHEFQEIGALYEKYCEAMRDLGLALTELLGISLGVERSHFRKFFEDGSSIMRLNSYPICEQGSVALGTGPHCDPTGLTILHQDQVGGLEVFADNKWHTVPPSQNALVINVGDIFMALCNGEYKSCVHRALVNKHKERRSLAFFLCPRKDKVVRPPETLVVGGGSRKYPDFAWSELLEFTQKYYRADAVTLQNFTKWVVSARPCDV 351
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 3261009 3262718 + Carg01565-RA Car15g00590 162427

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car15g00590 351 PANTHER GIBBERELLIN 20 OXIDASE 5 9 345 - -
Car15g00590 351 PRINTS Isopenicillin N synthase signature 54 71 - -
Car15g00590 351 PRINTS Isopenicillin N synthase signature 217 238 - -
Car15g00590 351 PRINTS Isopenicillin N synthase signature 280 298 - -
Car15g00590 351 Pfam 2OG-Fe(II) oxygenase superfamily 195 292 IPR044861 -
Car15g00590 351 PANTHER 2-OXOGLUTARATE (2OG) AND FE(II)-DEPENDENT OXYGENASE SUPERFAMILY PROTEIN-RELATED 9 345 - -
Car15g00590 351 SUPERFAMILY Clavaminate synthase-like 11 331 - -
Car15g00590 351 ProSiteProfiles Fe(2+) 2-oxoglutarate dioxygenase domain profile. 193 292 IPR005123 -
Car15g00590 351 Pfam non-haem dioxygenase in morphine synthesis N-terminal 32 129 IPR026992 -
Car15g00590 351 Gene3D - 4 324 IPR027443 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car15g00590 K05282 GA20ox; gibberellin-44 dioxygenase [EC:1.14.11.12] - csv:101209625 596.66
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car15g00590 Car-Chr15:3261009 Car17g00002 Car-Chr17:13230 4.22E-116 dispersed
Car15g00590 Car-Chr15:3261009 Car03g01002 Car-Chr3:8357065 3.97E-138 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g197 . . . . . Bpe04g00544 . . . . . . . . Sed01g0939 . . Bhi04g01851 Tan11g1219 Cmetu03g0027 . Hepe02g2737 . . Cla08g00640 Cam08g1059 Cec08g0644 Cco08g0755 Clacu08g0766 . Cre08g0572 . . . . . . . Cme03g00462 . . . . . . . . . . . . . . Car15g00590 . . . . . . . . . . . . . . . . Lsi08g00487 . Chy03g00549 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0014001 0 1 0 0 0 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 0 24
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car15g00590 Car_Chr15 FPKM 2.756141 2.676601 4.101645 3.433472 7.435378 9.223368 6.949486 6.90232 7.02921 8.122122