Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car15g00592 ATGAAGCTCACATGGAAGAACAAGGGCAATAGTAAGAAGCGGTCTTTCACGGCAATTTCAAGCCGTTCAAATCTTCCTTTTGAGGTTCCTGGTGAGGGGGAAGAAGATGGTAGGGTTAATCGCCAAGATAATGAAATAGACCGGAGAGAGGATGGAGCTTCAGAAAGTTCGTCTTCAGACCTCAAGCGTCTCGCGGAATCATTTCGGGATCAAGGCAATACGCTTGCCGAGAATGGGAAATTACGGGAAGCACTGGGAAAATGGGAGACTGCTCTTACCTTGATGCCTGAAAATGCAGTTCTACATGAACAAAAGTCACAAGTTCTACTGGAGATTGGGGAAGCTTGGGGTGCTTTGAAGGCAGCAACCAGTATGTTGCTTTCAATTACCTTTTACTGTTTCGATTGTCTAAGATTTTTCATATTGGTCGGAGCTACTGACTTAGATCCGTCATGGGCTGAGGCGTGGATCACTCTTGGTAGAGCACAGTTAAACTTTGGGGAACCTGATAGTGCTATAGAGAGCTTTGACAGAGCATTGGCCATTAAGCCTGATTCTGGGGATGCCCAAGACGATCGCAAAACTGCAACGCATCTAATAAAGCGGCGAAAACAGCTCCATTCAGCTGGGTTGAGCAGTTCTGAAAATCGTTATTTTGTGGGAGATAAGTTGAACAACGTTGACGGTTTATGA 693 45.45 MKLTWKNKGNSKKRSFTAISSRSNLPFEVPGEGEEDGRVNRQDNEIDRREDGASESSSSDLKRLAESFRDQGNTLAENGKLREALGKWETALTLMPENAVLHEQKSQVLLEIGEAWGALKAATSMLLSITFYCFDCLRFFILVGATDLDPSWAEAWITLGRAQLNFGEPDSAIESFDRALAIKPDSGDAQDDRKTATHLIKRRKQLHSAGLSSSENRYFVGDKLNNVDGL 230
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 3279124 3282503 + Carg01563-RA Car15g00592 162429

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car15g00592 230 ProSiteProfiles TPR repeat profile. 65 98 IPR019734 GO:0005515
Car15g00592 230 MobiDBLite consensus disorder prediction 29 61 - -
Car15g00592 230 ProSiteProfiles TPR repeat region circular profile. 153 185 - -
Car15g00592 230 Pfam Tetratricopeptide repeat 153 185 IPR013105 -
Car15g00592 230 MobiDBLite consensus disorder prediction 10 24 - -
Car15g00592 230 ProSiteProfiles TPR repeat profile. 153 186 IPR019734 GO:0005515
Car15g00592 230 MobiDBLite consensus disorder prediction 1 61 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car15g00592 - - - csv:101203269 333.183
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car15g00592 Car-Chr15:3279124 Car09g00706 Car-Chr9:4197145 6.48E-06 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g201 . Blo12g01116 . . . . . . . Cmo15g00656 . . . . Sed03g0441 . . Bhi04g01857 Tan11g1227 Cmetu03g1243 . Hepe02g2733 . Lcy10g1268 Cla08g00630 Cam08g1048 Cec08g0634 Cco08g0746 Clacu08g0755 . Cre08g0564 . . Cone17ag0811 . . . . Cme03g00478 . . . . . . . . . . . . . . Car15g00592 . . . . . . . . . . . . . . . . Lsi08g00475 . Chy03g00745 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011996 0 1 1 0 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 27
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car15g00592 Car_Chr15 FPKM 6.86636 5.75025 1.344456 1.6023 7.617117 7.69341 7.790815 0.272142 0.0 0.257792