Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car15g00596 TTTTCTTTTTCTTTTTCTTTTTCTCTCTCTCTCTCTTCGCAAACGGAATTCGTAGGAGCAGCAATTTGGACGCCATTGAAAAACTGCGCAAGTTCATCCGTTTACTCAATTTCGTCTTCCCCCAAGAGAGTCCGGCTAGTGCCATTTTTGGTGGGTTATCTGCTCGTTGGAATTCCTCTTGAATGCGATGAGATTGTATTCTTGTTTTCTCCGGTTGTAGATGTTATGGGATCATGTGATGACCCTGCTGTTATCGGAGAACCGGTTCGCGGCTCTATTACTCCGCTGTTCGGGTGTTCGAGTCAACCTCTTCCCAAGTATCAGTCACGCCAGGAGATGTCTTCCTTGCCATCCAATTCTAGTGACTGTCAGATGTTGGAACCAGATAGGGGACTGGGAGTGACTGCGACTAATATCTGCACGAATGCATCGGAGCCTGATACTGCAGGGGAGGATGGGACATCCAGAGGCTTCAAACATGCTGATACATTGCTATTGGATAAAAGGTTGGACTGTGATTCCGGCGATAGTGATCCCTGTTTAAATGAGGAGAACGAGGCTTGCAACGTGGGGAATGGAGCATTGAGCTTGGATATGAAAGAGTCTCAAGACGTTGATGATTTGGTTGATATTTTGGGCTGCAAAACTACCATGGAAATGATGTCTTTAGCTGGGTCATTAATGAATTCCGTTAAACCCGAAGGACTTGATAATAATAGTTGTATAATTGATGCTTCTGAAAAAGTTGAAAGCGGTGATATTGTAGAAAATGGTCCTCTTTTATCACGGATAGGTACTTGTACAGACGACTTAAAATCTCCTCACATCTGTGAAATTGTTTCTAGTTCAGCTTCTGCCGATGGATTGTCAAGTGATTTCATACATCAAAAACAGCTGGAAAATGATGGTGCTGGTTGTTCGTTTTCAGAGGTTGCAGACAGGTTAACTGAGGCTTTGGTTGAAATAGAAGCAGACATATTGAATGAGATGTCCCCTTTACAGAGTGATCAAATACTGCCAATACATATGGCACGATCAGTTGCCAATTGTGAACAATATATTTGCCAGATGGATGGGAAAGGCTTAAGTGGTACCTCTGGAGAAACAGTTAATGAATTTGCTGATATGAACAGCAATCCTGAATTGTGCTTGCAAATTTTGCCTTCACAAGGCTGCGAGAGGATTAGGGAATGCTTACAAGCTGATGATTCACCACTAACCATCCACTCTCCAGAGATTAATCGGTGTGATGAAAAGCATGACAGTAATTCCTTATCCAAGTACATTCCAGAAGTTGTGGAAGACGATTTTGTTGTCTTGACTGATAATAATGGTGATGGTGGACAACATATAGTACCTGATATGGAAAATAACTGCAATCTGGAGGAAGCCAGTATTCAAGAGAACACCAACTGTGTTGAGCTACTTGCATCCCCCTTGCCTTTTCAGCCCTTTAATTCTGAAAAATATGAATTTTATGGGATGTTGATTGGAGCAGATATGCCAATAAAGGATAATTCATGTAGTGTCAGTGATCAAGACAACAATGACACAGAGAAAGTTGGCCATGTTTCTGAAGTTAAATGTCCTGAAACAGTTCTCATGTCTTCTAAGAGGAGTGGCCGAAGGAGACCGTCAAGCCAAAAAAATGTGACAAAAAGGGCTTCCAGGAAAAGCAAAAAAATAGTGCCAGAACCGCTGATTTTTGACACAACAAGAAGAAGGAGAAGCTCTATATCTAGGCCAGCTCGTCCCTTGCCTTGGGGATCACTGGGCTTTATTATTCAGTCATTTGAAAAAATTGACGATGCTCTGGCAAATCAAAGCAAGAAGCAAGGGAATGAGAAATCTAAAGGTAATCAAGGAGGTACCAAGCGGAGTAAGAAACAGCCAAGTGAAAGTTCACATAGATCAAGAAAAGGGACCCAAGGAAAATGTGATACTTCAACTTCAACCAACCGTATTCGTTTGAAGGTTAAATTAGGGAAGAATGTGGGTCACAATTTTCTGAACATTGTGGTTCCTGAGATTGTTGATTCATCATTGTCTGCCAAGGGTATCAATTGCCATTATGGTAATGAATCATATTGGGAAGGTAATTTGGAATTTCCACCAAGTGTTGATGATCAAAAGCCTGAAGAGGGGTCTTTAAGAAAGATCTTCTGCTACAGCAAGAATGAGGATAAAGAAAAGAAATGTCCTGATGCTTCTGTTGTGAATGAACAATGTGCTAATAATGATTCAAGTTGCACCGTCACTATAGAGAAGTCATCTACAAAGCATGCAGATGATAATCTTTGTGTTTCCTCCCATATGGTTGAGCCTGTAGAAAGGGCAATTGATACCAGGAGTTTGGATCCTGGAACTTCACCTGATTCAGAAGTGATAAATTCGATGTTAGATATTCAAGTTGGAGCAATGCGTCAGGAAAAATTGCAGGACTCGGTGTTGCCATCTTTAGAAGATTTTGCTGCTTCTGGAAATGCTTCCAGCAGTAAGAAAGGAAGGAAGAAGGAGAAACCCTGTCAGGCAGTTAGTTGTTCTGATGAAGCTGGCACAGGTGCTTCGGCTTGCAATAACAGGTCCAAGTCATCAAAGAAGCATGGAAGAAGACTGAACGCGGACAATCAACTTGGTTCTGGTGAGACATTTACTTACAATGATGCGAATGTTGTAAACTACTCTTTAACTGTTAAGGAATTGTCTATTGATCAAGTGCCTTTGTCAACAGAGATTGAACTTCCAGAAGAGGCTTTGAAAGCAGATGGCATTCTCGAAGATAAAGAATGTTACAGAACAGATGTTGGCAGTGTGTTTCTTGAATCAGAGAATTCAAAAACATTTCTACCTTCTCAATCTGCAAGGAAGAAACATCCCAAAGGTTCAAAATCTATTAAAACAAGCAAAGGCAAGTCCAAGGCTCCTGGCTCAAAAAACAAAATAAAGAATGCTTCTAAAGAGAGGGTTTACCGACGGAAGTCTTTTAATAAGAGTATCAAGGAGGCTTTATGTGACCGAGTTGTTACTGAAACGGAAAGTCACCAAATAGTAGGAAATTACCTTGTAGATAAGCCCGAGAAAAGCAATGACATCATAGAATCCACAGTGGCAGTAAATTTGAATGTGGTACAGGGTGCTGTGAATGAGCAGTACATGCCTCCTCGCAATGCTTGGGTGCTCTGCGACGATTGTCATAAATGGCGACGCATACCAGCTTCTCTTGTGGATAGTTTAGGACATGCAAGTTGCACATGGACCTGTAAGGACAATGTGGACAAGGCTTTTGCTGACTGCTCAATCCCACAAGAGAAGTCTAATGCAGAGATTAATGCGGAGTTGGAAATATCAGATGAATCTGGGGAAGAAAATGCTTCTAATAAAAGGCTAACTTATAGGGAATTAGATAGTTTTCATCCAACAACAGTGACTGCTGTTCCTCAAGAGAACAAATTTACTTCCATTAGCAGCAATCACTTTTTGCACCGCAGTCGTAAAACTCAGACTATTGATGAGATAATGGTTTGTCATTGCAAACCAGCTTTGGATGGTCGATTAGGTTGTGGAGATGAATGCTTGAATCGAATGCTCAATATTGAATGCGTTCGAGGTACATGCCCTTGCGGGGACCTTTGTTCTAATCAACAGTTCCAGAAGCGCAAGTATGCTAAATTACGGTGGTTGCGATGCGGAAAGAAGGGTTATGGGCTACAGTCAGTTGAGGATATATCGAAAGGACAGTTTCTCATTGAGTATGTTGGAGAGGTCCTTGACATGCATGCTTATGAGGCACGTCAAAAGGAGTATGCATTGAACGGTCATCGACATTTTTACTTCATGACACTAGATGGCAGTGAGGTCATAGATGCATGTGGAAAGGGAAATTTGGGGCGTTTCATTAACCACAGTTGTGATCCAAATTGCCGCACGGAGAAGTGGATGGTGAATGGAGAAATCTGCATTGGGCTCTTTGCACTAAGGGATATTAAGAAGGGTGAAGAGGTGACATTTGACTACAATTATGTAAGGGTATTTGGGGCTGCTGCAAAAAAATGTTATTGTGGTTCTTTCCAATGTCGAGGTTACATAGGTGGAGACCCCCTCAATTCTGAGGTCATTATTCAAAGTGATTCAGATGAAGAATTTCCAGAACCAGTGATGCTTCGTCCAGATGGTAGAAGTTGGAATAATAACTTGCCAACTGCAGTTAGTTTGTTGGATGGTGTTAAAAAGCAACCCTCAGAGCATATAAAAGGGGTTAGGGATAAGAAAGATCAACCTATCAGAACTGCTGTCGAATCTAAGATTTCAGATGAAAAAGAGGATACTCCTAAGCTTTCTGCCTCGAAGATTTCAGAAGCAAAAGAGGATCCTCTTAACCTTTCTGCCTCTACAATTTCACCATTGCACAGTTCGTTGGAATTCGAAGACTCAAAGGTAGCATCACCTACTCCATTGGCTGATATTACCCATCAGACTGAAGATGTGACGAGCCAACCTGTGTTTGTGGATCAGCCAGAAATATCTCCTGGTGACAATAATTCTGACAAAAATACATGCTCTATTGAGCAGGAGGCAAAGTTATCAGTTGCTGAAATTGATGCTCGTAAGAAGTCTAAGCTGGATGCTGTTGAAGATAAGAAAGTATATATAAAGTCGCATCTTCGGATGAAAACATCGCGTAAACCAGGTTCCATCAAGAAAGGAAAAGTTAGCTCTGTAGAAAAAGTTCAAATAACTAACAGGCCCCAGATTTCCTCTGTAAAGCCCAAGCGATTGGTAGATGGTTCTCCTGGTAACCGCTTTGAAGCAGTTGAGGAGAAGCTTAATGAACTCCTGGATGCTGAAGGGGGAATTAGCAAAAGAAAAGACGCCCCTAAAGGATACTTAAAGCTTCTTCTCCTGACTGCTGCATCAGGTGCAAGTGCCAGCGGTGAAGCAATCCAGAGCAATCGAGATCTGTCAATGATCCTTGATGCTCTTTTGAAGACAAAGTCACGAGTAGTACTGACTGACATAATAAACAAAAACGGTTTGCGGATGCTGCATAACATAATGAAGCAATATAGAAGTGACTTCAAAAAGATACCGATTCTTCGGAAGCTTTTGAAGGTCCTAGAATACTTGGTTATGAGAGAGATACTCACCTCAGAGCATATTAATGGAGGTCCTCCTTGCCCTGGAATGGAAAGCTTAAGGGACTCTTTACTGTCGCTGACAGAGCATGATGACAAACAGGTACATCAAATTGCTCGAAGTTTTCGGGACAGATGGTTCCCCAGACATACCAGAAAATTTGTTTACTCTGAGAGGGAGGATGGAAGATTGGAAGTTTACAGGGGTTCAAACTGCAGTAGGTTTACAGCATCACACAGTTATCGGCGTGATCAGGATTCCAGACCCACAGATGCAATTGATTGTGTGAAACAGTCAATGTCTACATCTCTACCAGATGCTCATCCTGCAGAGGTCTGTACTATGGCTTCCACAGCTGGTCACTCATTGAATGGACAAAAAGTCTGTAAGCGTAAGAGTCGATGGGATCAGCCTGCAGACACAAGCCTAGATCTGAGATCCAAGGAGCAGAAGCTTGAATCAAAATCTGTGCAGCAATTCAATTCCAGCCAATTAAGTAGTGTTGGAGTGGTGTCAATGCTGATAGACAAGGTAAACAGTGATGATAAGGATTTCTCCCTCTCTGATTCTGTTGGAGTACGTGGTAGCCAAGACGATGATATCAGGGCAGACAGTGCAGTGCAGAACATCCCTGAAGATATTCCTCCTGGATTTTCTCCCTTCAGTCTCCCCGTGGCTTCTTCAAGTGCTTTTTCAACAGTTTTAGATCCTCCCCGACAGAGTATTGGCAAATTGAGTAGTGCTTTTTCCACGGTTGGGTACCCACAGGAAAAATTCATTTCTTGCTTGCCTGTGTCCTATGGAATTCCGTTTTCTATTGTTGAGCAATGTGGAACGTCCCGTGCAGAGAATCTGGAGTGTTGGGATGTTGCTCCTGGAGTGCCTTTTCATCCTTTTCCACCCCTACCACCATATCCCCGAGGTAAGCGAGGCCCACCTACGTCTGCCTGTGGTACTGCAGTTGAACAATCTTCTCAAGAAATGCAGGTCAACTGCCATGATTCTCGAACTTCTTTCTCAGAAGAAAACCCTCCTAGTACAAGTAATTACCAACAGGATTCATGCAATCTATCAAACATCCAACAAACATCGAAACGAGCAAAGGAATCATCGTATGACTTGGGAAGAAAGTACTTTAGGCAGGAAAAGTGGCGTAATACAAAGTTTGCCCCCCCGAGAACGGATCAGTGGGGATACCAGGGGAACTTCAGAAGTGGGGTGAGCACTCCAGGTGATGACAATATACCCAACGAAGGGATAAGTCTATATTGCTCAGATGAAGCAAGCGGTAGAGGGGATAAAGCTAATGATGATTTTTATCAGCATTTGCAGAACCAAAATCAGCGTTGA 6483 42.34 FSFSFSFSLSLSSQTEFVGAAIWTPLKNCASSSVYSISSSPKRVRLVPFLVGYLLVGIPLECDEIVFLFSPVVDVMGSCDDPAVIGEPVRGSITPLFGCSSQPLPKYQSRQEMSSLPSNSSDCQMLEPDRGLGVTATNICTNASEPDTAGEDGTSRGFKHADTLLLDKRLDCDSGDSDPCLNEENEACNVGNGALSLDMKESQDVDDLVDILGCKTTMEMMSLAGSLMNSVKPEGLDNNSCIIDASEKVESGDIVENGPLLSRIGTCTDDLKSPHICEIVSSSASADGLSSDFIHQKQLENDGAGCSFSEVADRLTEALVEIEADILNEMSPLQSDQILPIHMARSVANCEQYICQMDGKGLSGTSGETVNEFADMNSNPELCLQILPSQGCERIRECLQADDSPLTIHSPEINRCDEKHDSNSLSKYIPEVVEDDFVVLTDNNGDGGQHIVPDMENNCNLEEASIQENTNCVELLASPLPFQPFNSEKYEFYGMLIGADMPIKDNSCSVSDQDNNDTEKVGHVSEVKCPETVLMSSKRSGRRRPSSQKNVTKRASRKSKKIVPEPLIFDTTRRRRSSISRPARPLPWGSLGFIIQSFEKIDDALANQSKKQGNEKSKGNQGGTKRSKKQPSESSHRSRKGTQGKCDTSTSTNRIRLKVKLGKNVGHNFLNIVVPEIVDSSLSAKGINCHYGNESYWEGNLEFPPSVDDQKPEEGSLRKIFCYSKNEDKEKKCPDASVVNEQCANNDSSCTVTIEKSSTKHADDNLCVSSHMVEPVERAIDTRSLDPGTSPDSEVINSMLDIQVGAMRQEKLQDSVLPSLEDFAASGNASSSKKGRKKEKPCQAVSCSDEAGTGASACNNRSKSSKKHGRRLNADNQLGSGETFTYNDANVVNYSLTVKELSIDQVPLSTEIELPEEALKADGILEDKECYRTDVGSVFLESENSKTFLPSQSARKKHPKGSKSIKTSKGKSKAPGSKNKIKNASKERVYRRKSFNKSIKEALCDRVVTETESHQIVGNYLVDKPEKSNDIIESTVAVNLNVVQGAVNEQYMPPRNAWVLCDDCHKWRRIPASLVDSLGHASCTWTCKDNVDKAFADCSIPQEKSNAEINAELEISDESGEENASNKRLTYRELDSFHPTTVTAVPQENKFTSISSNHFLHRSRKTQTIDEIMVCHCKPALDGRLGCGDECLNRMLNIECVRGTCPCGDLCSNQQFQKRKYAKLRWLRCGKKGYGLQSVEDISKGQFLIEYVGEVLDMHAYEARQKEYALNGHRHFYFMTLDGSEVIDACGKGNLGRFINHSCDPNCRTEKWMVNGEICIGLFALRDIKKGEEVTFDYNYVRVFGAAAKKCYCGSFQCRGYIGGDPLNSEVIIQSDSDEEFPEPVMLRPDGRSWNNNLPTAVSLLDGVKKQPSEHIKGVRDKKDQPIRTAVESKISDEKEDTPKLSASKISEAKEDPLNLSASTISPLHSSLEFEDSKVASPTPLADITHQTEDVTSQPVFVDQPEISPGDNNSDKNTCSIEQEAKLSVAEIDARKKSKLDAVEDKKVYIKSHLRMKTSRKPGSIKKGKVSSVEKVQITNRPQISSVKPKRLVDGSPGNRFEAVEEKLNELLDAEGGISKRKDAPKGYLKLLLLTAASGASASGEAIQSNRDLSMILDALLKTKSRVVLTDIINKNGLRMLHNIMKQYRSDFKKIPILRKLLKVLEYLVMREILTSEHINGGPPCPGMESLRDSLLSLTEHDDKQVHQIARSFRDRWFPRHTRKFVYSEREDGRLEVYRGSNCSRFTASHSYRRDQDSRPTDAIDCVKQSMSTSLPDAHPAEVCTMASTAGHSLNGQKVCKRKSRWDQPADTSLDLRSKEQKLESKSVQQFNSSQLSSVGVVSMLIDKVNSDDKDFSLSDSVGVRGSQDDDIRADSAVQNIPEDIPPGFSPFSLPVASSSAFSTVLDPPRQSIGKLSSAFSTVGYPQEKFISCLPVSYGIPFSIVEQCGTSRAENLECWDVAPGVPFHPFPPLPPYPRGKRGPPTSACGTAVEQSSQEMQVNCHDSRTSFSEENPPSTSNYQQDSCNLSNIQQTSKRAKESSYDLGRKYFRQEKWRNTKFAPPRTDQWGYQGNFRSGVSTPGDDNIPNEGISLYCSDEASGRGDKANDDFYQHLQNQNQR 2160
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 3297937 3315694 - Carg01559-RA Car15g00596 162433

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car15g00596 2160 MobiDBLite consensus disorder prediction 2109 2126 - -
Car15g00596 2160 MobiDBLite consensus disorder prediction 2028 2079 - -
Car15g00596 2160 ProSiteProfiles SET domain profile. 1222 1339 IPR001214 GO:0005515
Car15g00596 2160 MobiDBLite consensus disorder prediction 2012 2081 - -
Car15g00596 2160 Pfam CW-type Zinc Finger 1058 1104 IPR011124 GO:0008270
Car15g00596 2160 ProSiteProfiles Post-SET domain profile. 1347 1363 IPR003616 -
Car15g00596 2160 MobiDBLite consensus disorder prediction 2100 2160 - -
Car15g00596 2160 MobiDBLite consensus disorder prediction 1411 1451 - -
Car15g00596 2160 MobiDBLite consensus disorder prediction 629 643 - -
Car15g00596 2160 MobiDBLite consensus disorder prediction 608 651 - -
Car15g00596 2160 MobiDBLite consensus disorder prediction 534 583 - -
Car15g00596 2160 MobiDBLite consensus disorder prediction 825 882 - -
Car15g00596 2160 ProSiteProfiles AWS domain profile. 1170 1220 IPR006560 GO:0005634|GO:0018024
Car15g00596 2160 MobiDBLite consensus disorder prediction 558 577 - -
Car15g00596 2160 MobiDBLite consensus disorder prediction 1411 1453 - -
Car15g00596 2160 Pfam AWS domain 1184 1219 IPR006560 GO:0005634|GO:0018024
Car15g00596 2160 MobiDBLite consensus disorder prediction 608 628 - -
Car15g00596 2160 MobiDBLite consensus disorder prediction 542 557 - -
Car15g00596 2160 Pfam SET domain 1233 1339 IPR001214 GO:0005515
Car15g00596 2160 MobiDBLite consensus disorder prediction 948 986 - -
Car15g00596 2160 ProSiteProfiles Zinc finger CW-type profile. 1052 1106 IPR011124 GO:0008270
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car15g00596 - - - bhj:120075567 3473.72
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Car04g02314 Car15g00596 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car10g00410 Car-Chr10:2052302 Car15g00596 Car-Chr15:3297937 3.00E-38 dispersed
Car11g01535 Car-Chr11:12307604 Car15g00596 Car-Chr15:3297937 7.41E-14 dispersed
Car15g00543 Car-Chr15:2965011 Car15g00596 Car-Chr15:3297937 8.34E-51 dispersed
Car15g00596 Car-Chr15:3297937 Car15g01292 Car-Chr15:10097571 1.22E-36 dispersed
Car15g00596 Car-Chr15:3297937 Car04g02314 Car-Chr4:18629551 1.77E-149 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g211 Blo01g01308 . Bda01g00676 . Bpe02g00629 . . Bma01g02090 Cmo04g02507 Cmo15g00659 . . . . . . . Bhi04g01862 Tan11g1236 . . Hepe02g2211 . Lcy10g1258 Cla08g00625 Cam08g1044 Cec08g0630 Cco08g0742 Clacu08g0751 . Cre08g0560 . . Cone17ag0818 Cone20ag0423 . . . Cme03g00490 . . . . . . . . . . . . . Car04g02314 Car15g00596 Cpe01g02076 . . . . . . . . . . . . . . . Lsi08g00466 . Chy03g00750 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003381 1 5 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 2 2 1 6 3 1 48
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
4814 PF00856 SET 1.60E-18 No_clan Car TR
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car15g00596 Car_Chr15 FPKM 79.202751 89.309021 27.597237 26.99016 33.551407 33.865204 34.243614 22.206808 23.484686 22.42906