Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car15g00602 ATGATGAGAATTTGCAGCTATGAGAGAAATAAACTTCCACTATGTAGATTGTTGGCTAGGCTGTACAGTTCTGGTGAACAAGTTGATACGGTCTCGGATTCAACCAAGAGTATATGTAAAATCATGATGACATGCCAAACACTGGCGCTTGAAACTGCCCTTGATCAAAGTGGGATTAGGATTTCACCTGAGATAGCTGAGGCTGTCCTAAAAAGATTTGAGAATGCTGGCATGTTAGCTTATAGGTTCTTTGAATGGGCTTCCAAACAACGAAGCTATGTCCATAGTGTGAGGGCTTACCACTCTATGATCGAGTCTTTAGCTAAGATAAGGCAGTACCAGATGGTGTGGGATTTGGTGAATGTTATGAGGAATAAGGAGATTCTAAATGTTGAGACGTTCTGTATTATCATGAGAAAGTATGCTAGAGCTCAGAAAGTAGAGGAAACAGTTTATACATTTAATATCATGGAAAAATACAACATGAAACCAAATGTAGCTGCATTTAATGGATTGCTGAGTGCTCTGTGCAAGTCCAAGAATGTGAGGAAGGCTCAGGAAATTTTTGACAGTATGAAGGATCAATTTGTTCCCGACTCGAAAACTTACAGCATACTCATTGAAGGATGGGGTAGGGCTCCAAATCTTCCAAAGGCAAGGGAGATTTTTAGAGAAATGATTGATAGCGGGTGCGTTCCTGATATAGTGACATATAGCATTATGGTTGATGTTCTTTGCAAAGCAGGACGAGTCGACGAAGCAGTTGGCATTGTAAAAGAAATGGATTCTAATAATTGTGGACCGACATCATTTGTCTATAGTGTTTTGGTACATACATATGGTGTAGAAAATCGGATCGAGGAGGCAGTCTCTACGTTCTTGGAGATGGAAAGAAATGGAGTAAGGGCTGATGTAGCAGCATATAATGCTTTAATCTCTGCTTTCTGTAAAGCAAACAGGATTAAGAATGTGTATAGGGTGTTAAAGGACATGGAATTAAAGGGTGTTAGCCCCAATTCAAGGACTTGCAACATCATTATAAACAGCTTAATAGGCAGTGGTGAGACAGATGAGGCGTTTAGGATGTTTCGAAGGATGGTCAAAGTGTGCGAACCAGACGTAGATTCGTATACCATGATCATAAAAATGTTCTGCGGGAGGAAGGAGGTTGATATGGCTCTTAAAGTTTGGAATTATATGAAGAAGAAGCAGTTTGTTCCAAGCATGCACACGTTTTCTGTTCTTATTAATGGACTGTGTCAAATAGGCAATGCTACAAAAGCTTGTGTATTGTTGGAAGAGATGATAGAGAAGGGAATACGGCCTTCTGGTGTCACATTTGGAAGGTTGAGACACTTATTGATCAAGGAAGGCAGAGAAGATGTTCTAAAATTTCTGCAGGACAAAATGAATTTACTTGTCAAGGAGCCAATGTGTGATTGA 1443 39.92 MMRICSYERNKLPLCRLLARLYSSGEQVDTVSDSTKSICKIMMTCQTLALETALDQSGIRISPEIAEAVLKRFENAGMLAYRFFEWASKQRSYVHSVRAYHSMIESLAKIRQYQMVWDLVNVMRNKEILNVETFCIIMRKYARAQKVEETVYTFNIMEKYNMKPNVAAFNGLLSALCKSKNVRKAQEIFDSMKDQFVPDSKTYSILIEGWGRAPNLPKAREIFREMIDSGCVPDIVTYSIMVDVLCKAGRVDEAVGIVKEMDSNNCGPTSFVYSVLVHTYGVENRIEEAVSTFLEMERNGVRADVAAYNALISAFCKANRIKNVYRVLKDMELKGVSPNSRTCNIIINSLIGSGETDEAFRMFRRMVKVCEPDVDSYTMIIKMFCGRKEVDMALKVWNYMKKKQFVPSMHTFSVLINGLCQIGNATKACVLLEEMIEKGIRPSGVTFGRLRHLLIKEGREDVLKFLQDKMNLLVKEPMCD 480
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 3339582 3341024 - Carg01553-RA Car15g00602 162439

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car15g00602 480 Pfam PPR repeat family 304 350 IPR002885 -
Car15g00602 480 Pfam PPR repeat family 372 421 IPR002885 -
Car15g00602 480 Pfam PPR repeat family 164 209 IPR002885 -
Car15g00602 480 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 165 195 IPR002885 -
Car15g00602 480 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 304 338 IPR002885 -
Car15g00602 480 Pfam PPR repeat 230 261 IPR002885 -
Car15g00602 480 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 234 268 IPR002885 -
Car15g00602 480 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 339 369 IPR002885 -
Car15g00602 480 Pfam PPR repeat 272 301 IPR002885 -
Car15g00602 480 Pfam PPR repeat 99 127 IPR002885 -
Car15g00602 480 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 130 164 IPR002885 -
Car15g00602 480 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 408 442 IPR002885 -
Car15g00602 480 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 269 303 IPR002885 -
Car15g00602 480 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 199 233 IPR002885 -
Car15g00602 480 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 373 407 IPR002885 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car15g00602 - - - mcha:111011765 898.271
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car04g02216 Car-Chr4:18005213 Car15g00602 Car-Chr15:3339582 1.51E-10 dispersed
Car01g00244 Car-Chr1:1358367 Car15g00602 Car-Chr15:3339582 1.68E-10 transposed
Car01g01561 Car-Chr1:13016230 Car15g00602 Car-Chr15:3339582 6.97E-32 transposed
Car03g00806 Car-Chr3:6642124 Car15g00602 Car-Chr15:3339582 1.21E-10 transposed
Car04g01295 Car-Chr4:7494175 Car15g00602 Car-Chr15:3339582 7.66E-09 transposed
Car04g02038 Car-Chr4:16555064 Car15g00602 Car-Chr15:3339582 1.31E-135 transposed
Car09g00037 Car-Chr9:184890 Car15g00602 Car-Chr15:3339582 1.35E-10 transposed
Car12g00093 Car-Chr12:413305 Car15g00602 Car-Chr15:3339582 4.08E-40 transposed
Car12g00640 Car-Chr12:4304713 Car15g00602 Car-Chr15:3339582 6.48E-14 transposed
Car12g00982 Car-Chr12:9901292 Car15g00602 Car-Chr15:3339582 5.61E-17 transposed
Car13g00748 Car-Chr13:8515405 Car15g00602 Car-Chr15:3339582 8.44E-25 transposed
Car14g01207 Car-Chr14:10527049 Car15g00602 Car-Chr15:3339582 6.42E-71 transposed
Car14g01435 Car-Chr14:12021811 Car15g00602 Car-Chr15:3339582 1.07E-14 transposed
Car14g01560 Car-Chr14:12777498 Car15g00602 Car-Chr15:3339582 8.30E-72 transposed
Car15g01270 Car-Chr15:9933426 Car15g00602 Car-Chr15:3339582 1.97E-55 transposed
Car17g00077 Car-Chr17:447265 Car15g00602 Car-Chr15:3339582 3.22E-16 transposed
Car17g00824 Car-Chr17:7056651 Car15g00602 Car-Chr15:3339582 1.96E-07 transposed
Car17g00852 Car-Chr17:7202879 Car15g00602 Car-Chr15:3339582 2.85E-39 transposed
Car18g00665 Car-Chr18:7877259 Car15g00602 Car-Chr15:3339582 5.01E-49 transposed
Car15g00602 Car-Chr15:3339582 Car09g00666 Car-Chr9:3911803 3.48E-06 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g221 . . . . . . . . . Cmo15g00663 . . . . Sed14g0950 . . Bhi04g01871 Tan11g1243 Cmetu09g0635 . Hepe02g2215 . . Cla08g00621 Cam08g1035 Cec08g0624 Cco08g0736 Clacu08g0745 . Cre08g0553 . . . Cone20ag0427 . . . . . . . Bda13g01470 . Bpe14g00395 . Bma02g00206 . . . . . . Car15g00602 . . . . . . . . . . . . . . . . Lsi08g00461 . Chy03g00757 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010579 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 32
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car15g00602 Car_Chr15 FPKM 2.471678 2.827687 57.537724 57.87088 0.0 0.299436 0.192559 2.196919 1.835006 1.994552