Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car15g00607 ATGCCTCTAGTTTTCCTCTGTTTCCTTCTCCAGTTTTCTTCTCTCCTTCCCCCGTCGTCGGCGGCGGCTAGCGGTAGTGGCAGCATAGTATTTACCACCCTTGGCAGGTCCGTCTACGCCTTCGATGTCTTCACCCTCCCGGCCGATGAAAACAGGGCCCCTTCTGCAGCGGATGAAACCCTAATCACCGATGGCGAATCCGTCAATTTCAATGGCTATTTCCCTTCGTCGTCGTCGTCATCTTCGATTCTCTCTCTTTTAACGAACCAATCACAGTCCTTACGGCCGGATTTGGAACTCGTTTATGTCACAGAGAGAAACGGAATCTCCAGAATCTTCTACGATGCGATTTTCGGTGGTACCGGATTTAGTGCTAGACGCCGGTCGGCGCTCGAGATTCCTCATCGACTGCAAATTCCCCTTGTGGATGATGAGCAGAAGAACGAAGTTAGGGTTTCCTTTAAAGATCGGCCGAATTTAAGCGGCGATTATTTGGTGTACGTGTCGACTCACGAGGACCCTGGCGAGTCCAGAACGAGTTGGGCGGCGGTGTACTCAAGAAGTTTAAGATCGGGTACAACTCGGCGATTGACGCCCTATGGAATCGCCGACTTTAGCCCTTCTGTTTCTCCGTCGGGAGTTTGGACGGCTGTAGCTTCCTATGGCGAGAAGGGCTGGGCCGGCGAAGTTGAGGAACTAAGTACCGATATATATATCTTCCTAACTCGCGACGGAACTCGTCGAGTTAAGGTCGTCGAACATGGTGGCTGGCCGTGTTGGGCCGACGATTCGACTCTTTATTTTCACCGGAGGGGCGATGACCAGTGGCTGAGTATATATAGAGCGATTCTCCCGAGTGATGGAGAAATTTCTACCGATTCAGTGATAATCGAACGACTCACTCCACCTGGTTTGCACGTGTTCACTCCGGCAACTTCTCCAGCCAATAAAAACCTAATCGCTGTCGCTACGAGAAGACCCGATTCGTCTTTCCGCCACATAGAGTTGTTCAATCTCGTCACCGGAGAATTCAAGGAGCTGACAAAAGCGGTTTCACCTAATTCTCACCATTTCAATCCGTTCATCTCCGCCGACGGGACTCGTATCGGTTACCACAAGTGCAGGGGCGACGGCAATGGAAGAAAAAGCAATACCCTGTTCTTAGAGAACGTTCGTAGCCCTGTTTCTAATTTATCCCTGTTCAGAATCGACGGTTCGTTTCCCTCTTTTTCGCCTGCAGGTGACCGTATAGCTTTCGTGAACTTTCCCGGATTATACGTCATCAATCGGGACGGTTCGAATCAACAGAAGGTTTACCCCGGCGCGGCGTTCTCAACGGCGTGGGATCCAGTGCGGGAAGGTGTAGTATACACCAGCGCCGGTCCCGATTTTGCGCCGTTGAGTTCTCAGGTGGATATCATTTCAGTCAACGTGGATGATGACGAGAGGACTATCAAGAGGCTGACGAAGAACGGTGAAAACAACGCCTTCCCCTCGCCGTCCCCCGACGGGAAATGGATCGTTTTCCGGTCGGGACGATCGGGCTATAAGAACCTGTACATAATGGACGCCGTCGACGGCGAGAACAAAGCGCTTCACCGGCTTACAGAGGGCCAGTGGACGGATACGATGTGCAGTTGGTCGCCAGACGGCGATTGGATTGCATTTGCATCGGACCGGCACAATCCCGGCGCCGGAAGTTTCGATCTGTTCTTGATCCACCCAAACGGAACCGGGTTGAGGAAGCTGTTTCAAAGCGGTTCGGCGGGTCGAGCGAACCACCCGAATTGGAGTCCGGACGGGAAGGTTCTAGTGTTCACTACGGACAATGCGGGGATATCTGCAGAGCCTATTTCGAACCCACATCACTACCAACCCTATGGTGAGATCTACACCATCAAAATGGACGGCTCGGATCTTCAGAGGCTGACTCATAACTCCTACGAGGATGGGACCCCCACGTGGAGCCCACGTTACATCAGCCCTGTCAACGTTCAGAACTCATATGACGTGGAACCCTGTGGCTTTGAAGATTGTCACTGGCTGAATCAAAAGAACAAGGCCCAGAATGAAATTAAGCCCGACTTAACCGGGCCTCGATGCAGCCCATAA 2112 52.23 MPLVFLCFLLQFSSLLPPSSAAASGSGSIVFTTLGRSVYAFDVFTLPADENRAPSAADETLITDGESVNFNGYFPSSSSSSSILSLLTNQSQSLRPDLELVYVTERNGISRIFYDAIFGGTGFSARRRSALEIPHRLQIPLVDDEQKNEVRVSFKDRPNLSGDYLVYVSTHEDPGESRTSWAAVYSRSLRSGTTRRLTPYGIADFSPSVSPSGVWTAVASYGEKGWAGEVEELSTDIYIFLTRDGTRRVKVVEHGGWPCWADDSTLYFHRRGDDQWLSIYRAILPSDGEISTDSVIIERLTPPGLHVFTPATSPANKNLIAVATRRPDSSFRHIELFNLVTGEFKELTKAVSPNSHHFNPFISADGTRIGYHKCRGDGNGRKSNTLFLENVRSPVSNLSLFRIDGSFPSFSPAGDRIAFVNFPGLYVINRDGSNQQKVYPGAAFSTAWDPVREGVVYTSAGPDFAPLSSQVDIISVNVDDDERTIKRLTKNGENNAFPSPSPDGKWIVFRSGRSGYKNLYIMDAVDGENKALHRLTEGQWTDTMCSWSPDGDWIAFASDRHNPGAGSFDLFLIHPNGTGLRKLFQSGSAGRANHPNWSPDGKVLVFTTDNAGISAEPISNPHHYQPYGEIYTIKMDGSDLQRLTHNSYEDGTPTWSPRYISPVNVQNSYDVEPCGFEDCHWLNQKNKAQNEIKPDLTGPRCSP 703
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 3362725 3364836 + Carg01548-RA Car15g00607 162444

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car15g00607 703 PANTHER DPP6 N-TERMINAL DOMAIN-LIKE PROTEIN 26 678 - -
Car15g00607 703 Gene3D - 123 393 IPR011042 -
Car15g00607 703 Gene3D - 590 660 IPR011042 -
Car15g00607 703 PANTHER DPP6 N-TERMINAL DOMAIN-LIKE PROTEIN 26 678 - -
Car15g00607 703 SUPERFAMILY Tricorn protease N-terminal domain 406 657 - -
Car15g00607 703 Pfam WD40-like Beta Propeller Repeat 486 521 IPR011659 -
Car15g00607 703 Pfam WD40-like Beta Propeller Repeat 541 571 IPR011659 -
Car15g00607 703 Pfam WD40-like Beta Propeller Repeat 593 609 IPR011659 -
Car15g00607 703 Gene3D - 403 565 IPR011042 -
Car15g00607 703 SUPERFAMILY DPP6 N-terminal domain-like 161 480 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car15g00607 - - - csv:101203758 1231.08
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car15g00607 Car-Chr15:3362725 Car17g00952 Car-Chr17:7746957 3.11E-162 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g228 . . . . . . . . . Cmo15g00667 . . . . Sed03g0428 . . Bhi04g01877 Tan11g1249 Cmetu03g0593 . Hepe02g2220 . Lcy10g1246 Cla08g00617 Cam08g1031 Cec08g0620 Cco08g0732 Clacu08g0741 . Cre08g0549 . . Cone17ag0825 . . . . . . Blo18g00176 . Bda01g01455 Bpe02g01652 . Bma01g00803 . . . . . . . Car15g00607 . . . . . . . . . . . . . . . . Lsi08g00457 . Chy03g00761 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008521 3 1 1 3 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 35
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car15g00607 Car_Chr15 FPKM 2.436744 2.638678 0.0 0.528729 0.0 0.0 0.0 0.216388 0.0 0.0