Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car15g00608 ATGTCCGCTCATAATCGCCGCCCGTCGTTTTCGTCGTCGACGTCGTCGTCGTTGGCTAAACGACAAGCGTCGTCGGCCTCGTCGTCCGATAATGTCGGAAAGGTTGTGGCAGTTCCGCCACACTTGGCGAAGAAGCGAGCGCCACTCGGTAACCTAACGAATCTCAAGAGTGTGTCTCATAATGCTGCTAAAAGCTCTGTTCCGCCTGCTATTATGGTGCCTTGTGCAACCAAAGCTGTCAAGGCAAGGAAGAGTTCCCCTGCTAGAACTCGCATTGCTAACTTGCCGGCGGCGGCTCATACGGCCACATTGATTGATGTCAAAACGACGAATTCAATTGTCCCTAGCAATGTTCCAGCAATCTCAAGAACTGATGCCACCGCCGTCTCTAGTAGTATGGATGTCTCTCCGACTAAATCAGATGGAGTGTCACTTTCCTTGGATGAAACTATGTCTACTTGTGATTCTTTTAAGAGTCCTGACGTTGAGTACATGGACAATACTGATGTCCCAGCTGTTGATTCCGTTGAGAGGAAAACTAAAACCAGTCTCTGCATTTCAGGTCACCCACCAATTAAAGGTAGCATATGCAATAGAGATGCACTTGCAGAAATGGAAACAGATAGCGATATCATTGATGTTGATACCGATTTCATGGATCCCCAGCAATGTGCTACAATTGCTTGTGATATTTACAAGCACTTGCGAGCATCTGAGGCTAAGAAAAGGCCTTCTACAGATTTCATGGAGAAAATTCAGAAGGATGTAAATTCAAATATGCGTGCCATACTGATTGATTGGCTTGTGGAGGTAGCAGAAGAGTATAGGCTTGTGCCAGATACTTTATATTTGACAGTGAACTACATCGATCGATACCTATCGGGAAACTCGATGGATCGACAACGATTACAGTTGCTTGGTGTTGCTTGCATGATGATTGCTTCAAAATATGAAGAGATCTGTGCACCTCAAGTGGAAGAATTTTGTTACATAACTGATAACACATACTTTAAAGAAGAGGTATTGCAAATGGAATCTTCTGTCTTGAATTACTTGAAGTTTGAAATGACAGCTCCAACACCGAAATGTTTCTTAAGGCGATTTGTTCGAGCTGCTCAAGGGTCCACCGATGAGGTTTCGTCGATGCAGCTGGAATGCTTGTCCAACTTCCTAGCTGAATTATCTCTTTTGGAATACAGTATGCTATGCTACGCACCGTCGCTCGTAGCTGCATCGGCGATCTTCTTGGCGAAGTTCATACTTGTTCCAACCAAAAGACCATGGAACTCGACCTTGCAGCATTATACACATTATCAGCCATCCGACCTTGTCGAGTGCGTTAAGGATTTACATCGCCTCTGCTGTAACGCCCACAATTCTAGCTTACCAGCCATCAGAGAGAAATACAGCCAGCATAAGTACAAGCACGTGGCGAAGAAGTATTGCCCTCCGACGATACCGCCCGAGTTTTTCCAGACTCAAACACAGTAG 1491 45.41 MSAHNRRPSFSSSTSSSLAKRQASSASSSDNVGKVVAVPPHLAKKRAPLGNLTNLKSVSHNAAKSSVPPAIMVPCATKAVKARKSSPARTRIANLPAAAHTATLIDVKTTNSIVPSNVPAISRTDATAVSSSMDVSPTKSDGVSLSLDETMSTCDSFKSPDVEYMDNTDVPAVDSVERKTKTSLCISGHPPIKGSICNRDALAEMETDSDIIDVDTDFMDPQQCATIACDIYKHLRASEAKKRPSTDFMEKIQKDVNSNMRAILIDWLVEVAEEYRLVPDTLYLTVNYIDRYLSGNSMDRQRLQLLGVACMMIASKYEEICAPQVEEFCYITDNTYFKEEVLQMESSVLNYLKFEMTAPTPKCFLRRFVRAAQGSTDEVSSMQLECLSNFLAELSLLEYSMLCYAPSLVAASAIFLAKFILVPTKRPWNSTLQHYTHYQPSDLVECVKDLHRLCCNAHNSSLPAIREKYSQHKYKHVAKKYCPPTIPPEFFQTQTQ 496
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 3365078 3368123 - Carg01547-RA Car15g00608 162445
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car15g00608 496 MobiDBLite consensus disorder prediction 1 32 - -
Car15g00608 496 Pfam Cyclin, N-terminal domain 230 356 IPR006671 -
Car15g00608 496 Pfam Cyclin, C-terminal domain 359 479 IPR004367 -
Car15g00608 496 ProSitePatterns Cyclins signature. 261 292 IPR006671 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car01g01408 Car-Chr1:12228308 Car15g00608 Car-Chr15:3365078 4.92E-104 dispersed
Car05g00137 Car-Chr5:681997 Car15g00608 Car-Chr15:3365078 2.29E-96 dispersed
Car09g00224 Car-Chr9:1270216 Car15g00608 Car-Chr15:3365078 3.96E-107 dispersed
Car12g00289 Car-Chr12:1889539 Car15g00608 Car-Chr15:3365078 5.56E-93 dispersed
Car15g00608 Car-Chr15:3365078 Car17g00774 Car-Chr17:6828462 4.38E-106 dispersed
Car19g00883 Car-Chr19:9117124 Car15g00608 Car-Chr15:3365078 3.36E-54 dispersed
Car04g02306 Car-Chr4:18576798 Car15g00608 Car-Chr15:3365078 1.74E-85 transposed
Car15g00608 Car-Chr15:3365078 Car04g02305 Car-Chr4:18575287 1.74E-88 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car15g00608 K06627 - csv:101221569 882.478