Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Car15g00613 | ATGTCGGAAGCAATCGCCGTGATGGATATTGACGACGATAATGGCAACAACGAAGATGAAAAGTCAGTCGAGGGCAAAAACGTCGCCGGTCCTGCAGACGCACCCGACGGTAAAGCGATACCCTGGGTCGAGAGGTTCCGGCCCAAGTCTCTCGCCGATGTTGCTGCCCACCGCGACATTGTAGACACCATCGACAAGCTGACCAGTGAGAATAGGCTGCCACATCTCCTGTTGTATGGCCCTCCTGGCACTGGCAAGACATCAACCATTCTAGCGGTTGCTCGCAAGCTTTATGGAACAAACTACCACAACATGATACTGGAGCTGAATGCATCAGACGATAGAGGGATCGATGTTGTTAGACAGCAGATTCAAGATTTTGCAAGTACCCAAAGCTTTTCATTTGGGGCAAAAGCATCTGTAAAATTGGTACTATTGGACGAGGCAGATGCCATGACTAAAGATGCACAGTTTGCTTTGCGTAGAGTAATTGAGAAATACACAAAAAATACACGGTTTGCTCTTATCTGTAATCATGTCAATAAGATTATTCCAGCGTTACAATCAAGGTGTACCCGTTTTCGATTTGCTCCCCTTGATAACGTTCATGTCACTGAACGACTCAGATATGTTATTGAGGCTGAGAGGTTGGACGTAACTGAGGGTGGCTTAGCTGCCCTTGTTCGACTTTGCACTGGTGATATGAGAAAGGCTTTAAATATTCTGCAGTCAACGCATATGGCTTCCCAGCATATTACCGAAGAAGCTGTCTATCTCTGCACAGGAAATCCATTGCCTAAAGACATAGAGCAAATATCCTTTTGGCTGCTGAATGAACCATTTTCTGACAGTTTTAAGCGAATATATGAAATAAAGACCAGAAAAGGATTGGCTTTGGTTGATATAGTGAGAGAAGTCACTCTGTTTGTTTTCAAGATCAAGATGCCATCGGATGTCAGAGTTCAGTTGGTTAATGATCTGGCTGACATAGAGTACAGGATGAGTTTCGGATGCAATGACAAGTTACAACTTGGATCGCTCATCTCATCTTTTACCCGAGCTAGATCTGCACTTGTCGCTGCTGCACAGTAG | 1092 | 44.96 | MSEAIAVMDIDDDNGNNEDEKSVEGKNVAGPADAPDGKAIPWVERFRPKSLADVAAHRDIVDTIDKLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGTNYHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGAKASVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICNHVNKIIPALQSRCTRFRFAPLDNVHVTERLRYVIEAERLDVTEGGLAALVRLCTGDMRKALNILQSTHMASQHITEEAVYLCTGNPLPKDIEQISFWLLNEPFSDSFKRIYEIKTRKGLALVDIVREVTLFVFKIKMPSDVRVQLVNDLADIEYRMSFGCNDKLQLGSLISSFTRARSALVAAAQ | 363 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 15 | 3395071 | 3401349 | - | Carg01542-RA | Car15g00613 | 162450 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Car15g00613 | 363 | Pfam | Replication factor C C-terminal domain | 264 | 350 | IPR013748 | - | |
| Car15g00613 | 363 | Pfam | ATPase family associated with various cellular activities (AAA) | 76 | 196 | IPR003959 | GO:0005524|GO:0016887 | |
| Car15g00613 | 363 | CDD | AAA | 60 | 198 | - | - | |
| Car15g00613 | 363 | MobiDBLite | consensus disorder prediction | 1 | 39 | - | - | |
| Car15g00613 | 363 | SMART | AAA_5 | 72 | 203 | IPR003593 | - |
Event-related genes
| Select | Gene_1 | Gene_2 | Event_name |
|---|---|---|---|
| Car04g02301 | Car15g00613 | CST |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Car04g00567 | Car-Chr4:3218293 | Car15g00613 | Car-Chr15:3395071 | 5.26E-11 | dispersed | |
| Car04g01141 | Car-Chr4:6568753 | Car15g00613 | Car-Chr15:3395071 | 1.21E-45 | dispersed | |
| Car06g01080 | Car-Chr6:8111849 | Car15g00613 | Car-Chr15:3395071 | 1.51E-09 | dispersed | |
| Car09g00683 | Car-Chr9:4003761 | Car15g00613 | Car-Chr15:3395071 | 7.74E-06 | dispersed | |
| Car15g00613 | Car-Chr15:3395071 | Car16g00784 | Car-Chr16:5021555 | 1.46E-10 | dispersed | |
| Car03g00180 | Car-Chr3:3080394 | Car15g00613 | Car-Chr15:3395071 | 3.20E-28 | transposed | |
| Car06g01006 | Car-Chr6:7642706 | Car15g00613 | Car-Chr15:3395071 | 3.11E-09 | transposed | |
| Car07g00423 | Car-Chr7:2149019 | Car15g00613 | Car-Chr15:3395071 | 6.56E-13 | transposed | |
| Car16g00970 | Car-Chr16:8093396 | Car15g00613 | Car-Chr15:3395071 | 7.19E-63 | transposed | |
| Car04g01140 | Car-Chr4:6565584 | Car15g00613 | Car-Chr15:3395071 | 2.90E-08 | transposed | |
| Car15g00613 | Car-Chr15:3395071 | Car04g02301 | Car-Chr4:18466410 | 0 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Car15g00613 | K10756 | - | csv:101217230 | 674.47 |