Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car15g00647 ATGGCATCTGCCATGGCCAAACCCAAAACCCAGACAAAGCTCAGCCGACAAACCCATCAAAACCAGAAACCAAAGCCGCCGTCTTGGGCGGTTGTTAGAGGCATATTCAGCTGCAAGTACCTGCAGCCTCAGCAGCCACAAGAAAAACGACAACAACAGGAGCAAACAGCAGAAGAGAGTAGGAAGAACTGTAAGAAAATGAGGTGTTCGGGTTCACTCTGTAACAACACCAAGGTAACGCATGAAGTTCACAAGAACAGGGCATTATCTTCAAGTTCAAGTAGATACTCAAAAGCTCCTCCTTTGAACGAACAAAATGGTATTCCATCAGCCACTTGTTCATCATTATCTGCATCATCTTCTTCCAATTCCTCTAGTGGAGCCTCTTTCAGGGGAATGCCATTCAGAAAGTTCTACGGCTGCTATGAATGTAAAATGGTGATTAACCCTGTTAATGGGATGGCTAGAGACCCTTTTCTTAGAGCAACCATTTGGCCCTGTTCTGAATGTGGTGAGGTTTTCATGAAACCTGAAGCTTTGGAGCTTCACAAGAGTGTTAGACATGCAGTGTCTGAACTTGGTCCTGAAGACACGAGCAAGAACATAGTGGAGATTATATTTCAATCAAGCTGGTTGAAAAAACAAACCCCAATTTGCAAAATTGAAAGGATTTTGAAAATCCACAACACTTCAAAAACCATCTCGAGATTCGAGGAATACAGGGACTCCATTAAAGGCAAAGCCATCAAGCTTTCAAAGAAGCACCCACGTTGCATAGCAGATGGTAACGAACTCCTGAGGTTCCATTGCACGACGTTGGCTTGCTCATTGGGCCTAAATGGCTCTTCTAACCTCTGTAGTTCAATCCCACAATGCAATGTTTGTAGTATAATCAAGCATGGGTTCAAGGTGGCTGCAGAGGCCACTGGAGGGGACGCAGGGAAGGGTATTCTAACAACTGCTACAAGTGGAAAGGCTCATGACAGTGCTGGAATGTCATTGGACGGCAAAGACAAACGAGCAATGCTGGTTTGTCGGGTAATTGCTGGCAGGGTTAAGAAGAGTTCAGAAAGCAGCGTGGAGGATTATGACTCTTTGGCCGGAGAAGCTGGCTTGTATTCCAATCTGGATGAGTTATATGTGTTCAGTCCCAAGGCAATATTGCCTTGTTTTGTTGTCATTTATGGTGGGTTTTAA 1197 44.7 MASAMAKPKTQTKLSRQTHQNQKPKPPSWAVVRGIFSCKYLQPQQPQEKRQQQEQTAEESRKNCKKMRCSGSLCNNTKVTHEVHKNRALSSSSSRYSKAPPLNEQNGIPSATCSSLSASSSSNSSSGASFRGMPFRKFYGCYECKMVINPVNGMARDPFLRATIWPCSECGEVFMKPEALELHKSVRHAVSELGPEDTSKNIVEIIFQSSWLKKQTPICKIERILKIHNTSKTISRFEEYRDSIKGKAIKLSKKHPRCIADGNELLRFHCTTLACSLGLNGSSNLCSSIPQCNVCSIIKHGFKVAAEATGGDAGKGILTTATSGKAHDSAGMSLDGKDKRAMLVCRVIAGRVKKSSESSVEDYDSLAGEAGLYSNLDELYVFSPKAILPCFVVIYGGF 398
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 3571696 3572972 - Carg01508-RA Car15g00647 162484
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car15g00647 398 ProSiteProfiles Zinc finger C2H2 type domain profile. 165 193 IPR013087 -
Car15g00647 398 MobiDBLite consensus disorder prediction 84 129 - -
Car15g00647 398 MobiDBLite consensus disorder prediction 1 62 - -
Car15g00647 398 MobiDBLite consensus disorder prediction 1 25 - -
Car15g00647 398 ProSitePatterns Zinc finger C2H2 type domain signature. 167 188 IPR013087 -
Car15g00647 398 MobiDBLite consensus disorder prediction 86 129 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Car04g02261 Car15g00647 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car09g00098 Car-Chr9:476995 Car15g00647 Car-Chr15:3571696 2.06E-109 dispersed
Car15g00647 Car-Chr15:3571696 Car16g00829 Car-Chr16:5472356 2.70E-76 dispersed
Car15g00647 Car-Chr15:3571696 Car04g02261 Car-Chr4:18260093 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
4821 None None None None Car TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car15g00647 - - bhj:120067077 629.402